Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2405 and Atu2406 are separated by 22 nucleotidesAtu2406 and Atu2407 are separated by 9 nucleotidesAtu2407 and Atu2408 are separated by 106 nucleotidesAtu2408 and Atu2409 are separated by 26 nucleotides Atu2405: Atu2405 - urease beta subunit, at 2,376,164 to 2,376,469 Atu2405 Atu2406: Atu2406 - hypothetical protein, at 2,376,492 to 2,376,749 Atu2406 Atu2407: Atu2407 - urease gamma subunit, at 2,376,759 to 2,377,061 Atu2407 Atu2408: Atu2408 - urease accessory protein, at 2,377,168 to 2,377,899 Atu2408 Atu2409: Atu2409 - hypothetical protein, at 2,377,926 to 2,379,182 Atu2409
Group Condition Atu2405 Atu2406 Atu2407 Atu2408 Atu2409
nitrogen source L-Arginine (N) N.D. -0.2 -3.2 -3.1 -0.0
nitrogen source L-Arginine (N) N.D. +0.1 -2.8 -3.3 +0.1
nitrogen source L-Ornithine (N) N.D. +0.5 -1.7 -1.6 -0.1
stress R2A with Vancomycin 0.009 mM N.D. -0.3 +0.1 -0.1 -2.4
stress R2A with Vancomycin 0.009 mM N.D. +0.5 -0.6 -0.3 -2.2
nitrogen source L-Ornithine (N) N.D. +0.6 -1.3 -1.6 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -1.2 -1.1 +0.1 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -1.1 -0.4 -0.2 -0.1
phage AgroPhage_E04 N.D. -0.1 -1.6 -0.1 +0.2
nitrogen source D-Lysine (N) N.D. +0.1 -0.8 -0.8 -0.1
phage AgroPhage_D10 N.D. -0.4 -1.0 -0.3 +0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 -0.8 +0.2 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -1.5 +0.2 -0.1 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -1.6 +0.2 -0.1 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -1.4 +0.4 +0.2 -0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -1.5 +0.4 -0.0 -0.0
no phage P3L5 N.D. -1.0 +0.4 -0.2 -0.3
phage AgroPhage_A07 N.D. -1.2 -0.3 +0.2 +0.5
no phage P5L5 N.D. -1.1 +0.7 +0.2 +0.0
stress R2A with tungstate 375 mM N.D. +0.7 -0.6 -0.3 +0.3
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.7 +0.7 +0.3 -0.1
nitrogen source DL-2-Aminobutyric (N) N.D. -1.2 +1.0 -0.4 +0.7
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.7 -0.4 +0.2 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.3 +1.1 -0.1 -0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +1.3 -0.2 +0.1 -0.1
phage AgroPhage_E10 N.D. +1.2 -1.0 +0.2 +0.8
nitrogen source Ethanolamine (N) N.D. +0.9 +0.4 -0.3 +0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.7 +0.4 -0.2 +0.3
Atjh10 N.D. +0.5 +0.9 +0.2 -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +1.6 +0.1 -0.1 +0.2
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