Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2389 and Atu2390 overlap by 4 nucleotidesAtu2390 and Atu2391 are separated by 21 nucleotidesAtu2391 and Atu2392 are separated by 602 nucleotidesAtu2392 and Atu2393 are separated by 13 nucleotides Atu2389: Atu2389 - ABC transporter, membrane spanning protein, at 2,359,474 to 2,360,349 Atu2389 Atu2390: Atu2390 - ABC transporter, membrane spanning protein, at 2,360,346 to 2,361,218 Atu2390 Atu2391: Atu2391 - ABC transporter, substrate binding protein (nitrate/sulfonate/taurine/bicarbonate), at 2,361,240 to 2,362,232 Atu2391 Atu2392: Atu2392 - HlyD family secretion protein, at 2,362,835 to 2,364,028 Atu2392 Atu2393: Atu2393 - Acr family transporter, at 2,364,042 to 2,367,362 Atu2393
Group Condition Atu2389 Atu2390 Atu2391 Atu2392 Atu2393
stress R2A with Novobiocin 0.002 mM +0.1 -0.1 -0.0 -1.8 -1.7
stress R2A with Novobiocin 0.002 mM -0.0 +0.0 -0.3 -1.6 -1.5
stress R2A with Tetracycline 0.002 mM -0.2 -0.2 +0.1 -0.7 -1.1
stress R2A with Tetracycline 0.002 mM -0.2 -0.2 +0.1 -0.7 -1.0
nitrogen source Orotic (N) -0.5 -0.6 -0.7 +0.0 -0.1
nitrogen source Orotic (N) -0.3 -0.4 -0.5 -0.2 +0.1
stress R2A with Fusidic 0.002 mM -0.2 +0.1 -0.2 -0.4 -0.3
stress R2A with Bacitracin 0.6 mM -0.3 +0.2 -0.0 -0.2 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.0 -0.1 -0.6 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 -0.1 -0.3 -0.2
phage AgroPhage_B01 +0.1 +0.2 -0.9 +0.1 +0.0
phage AgroPhage_C04 -0.1 -0.5 +0.3 -0.1 -0.1
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.1 -0.7 +0.3 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -0.0 -0.4 -0.3 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.1 -0.4 -0.2 +0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.4 -0.7 -0.3 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.4 -0.2 -0.0 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 -0.4 +0.1 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.2 -0.3 +0.1 +0.2
phage AgroPhage_H04 +0.4 +0.1 -0.3 +0.2 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.1 +1.0 -0.2 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.2 +0.1 +0.3 +0.1
nophagecontrol No phage control -0.2 +0.4 +0.4 +0.1 +0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.4 +0.2 -0.2 +0.1
phage AgroPhage_H10 -0.2 +0.3 +0.7 -0.0 +0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 +0.6 -0.1 -0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.0 +0.4 -0.1 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.2 +0.3 +0.2 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 +0.0 +0.4 -0.1 +0.3
nitrogen source DL-2-Aminobutyric (N) +0.2 +0.3 -0.1 +0.9 +0.0
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