Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2387 and Atu2388 overlap by 4 nucleotidesAtu2388 and Atu2389 are separated by 234 nucleotidesAtu2389 and Atu2390 overlap by 4 nucleotidesAtu2390 and Atu2391 are separated by 21 nucleotides Atu2387: Atu2387 - NTP pyrophosphohydrolase, MutT family, at 2,358,011 to 2,358,448 Atu2387 Atu2388: Atu2388 - ABC transporter, nucleotide binding/ATPase protein (nitrate), at 2,358,445 to 2,359,239 Atu2388 Atu2389: Atu2389 - ABC transporter, membrane spanning protein, at 2,359,474 to 2,360,349 Atu2389 Atu2390: Atu2390 - ABC transporter, membrane spanning protein, at 2,360,346 to 2,361,218 Atu2390 Atu2391: Atu2391 - ABC transporter, substrate binding protein (nitrate/sulfonate/taurine/bicarbonate), at 2,361,240 to 2,362,232 Atu2391
Group Condition Atu2387 Atu2388 Atu2389 Atu2390 Atu2391
nitrogen source Orotic (N) -0.4 -0.5 -0.5 -0.6 -0.7
nitrogen source Orotic (N) -0.7 -0.4 -0.3 -0.4 -0.5
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.8 -0.2 +0.1 -0.2
in planta Bethi_Library_OD0.1 -0.2 -0.3 -0.2 -0.3 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.5 -0.1 -0.3 -0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.2 +0.0 -0.1 -0.7
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.5 +0.0 -0.4 +0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.2 +0.2 -0.0 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.5 +0.4 -0.2 -0.3
phage AgroPhage_B01 +0.1 -0.2 +0.0 +0.2 -0.9
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.0 +0.4 +0.4 -0.7
phage AgroPhage_D10 -0.4 -0.6 +0.4 +0.1 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.7 +0.4 -0.2 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 +0.3 -0.3 -0.4
Atjh14 -0.5 +0.2 -0.3 +0.2 +0.5
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.5 +0.2 +0.4 +0.2
phage AgroPhage_H04 +0.3 -0.3 +0.4 +0.1 -0.3
phage Phage 95.3 + bacteria -0.4 +0.3 -0.1 -0.1 +0.4
Atjh10 +0.1 -0.4 +0.1 -0.0 +0.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 +0.4 -0.0 +0.4
Atjh15 -0.1 +0.7 -0.4 +0.0 +0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 +0.3 +0.1 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 +0.3 +0.2 -0.0 -0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.3 +0.7 +0.0 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.4 -0.6 +0.1 +1.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.3 +0.3 +0.0 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.7 -0.3 +0.4 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.9 -0.2 +0.2 -0.1
nophagecontrol No phage control +0.2 +0.2 -0.2 +0.4 +0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.3 +0.5 -0.0 -0.3
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