Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2385 and Atu2386 overlap by 4 nucleotidesAtu2386 and Atu2387 are separated by 2 nucleotidesAtu2387 and Atu2388 overlap by 4 nucleotidesAtu2388 and Atu2389 are separated by 234 nucleotides Atu2385: Atu2385 - N-carbamoyl-beta-alanine amidohydrolase, at 2,355,325 to 2,356,554 Atu2385 Atu2386: Atu2386 - dihydropyrimidinase, at 2,356,551 to 2,358,008 Atu2386 Atu2387: Atu2387 - NTP pyrophosphohydrolase, MutT family, at 2,358,011 to 2,358,448 Atu2387 Atu2388: Atu2388 - ABC transporter, nucleotide binding/ATPase protein (nitrate), at 2,358,445 to 2,359,239 Atu2388 Atu2389: Atu2389 - ABC transporter, membrane spanning protein, at 2,359,474 to 2,360,349 Atu2389
Group Condition Atu2385 Atu2386 Atu2387 Atu2388 Atu2389
nitrogen source Orotic (N) -0.5 -0.3 -0.4 -0.5 -0.5
nitrogen source Orotic (N) -0.4 -0.4 -0.7 -0.4 -0.3
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.1 -0.5 -0.8 -0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.2 -0.5 -0.2 +0.2
phage AgroPhage_A07 -0.5 -0.2 -0.2 +0.2 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.0 -0.7 -0.5 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.2 +0.0 -0.5 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.1 -0.1 +0.4 -0.6
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 -0.6 -0.2 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.0 -0.3 -0.2 -0.3 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.3 -0.3 -0.5 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.2 -0.3 -0.0 -0.4 +0.3
phage AgroPhage_D10 +0.2 -0.1 -0.4 -0.6 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.1 -0.3 -0.0 -0.5 +0.3
Atjh14 +0.2 -0.0 -0.5 +0.2 -0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 -0.2 -0.5 +0.2
stress R2A with Tetracycline 0.002 mM +0.2 -0.2 -0.4 +0.4 -0.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 +0.3 -0.3 -0.3 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.2 +0.4 -0.7 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 -0.3 +0.1 +0.8 -0.1
Atjh15 -0.2 +0.2 -0.1 +0.7 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.1 +0.4 -0.3 +0.3
phage AgroPhage_C10 +0.2 -0.2 +0.1 +0.4 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.1 +0.1 +0.9 -0.2
stress Chloramphenicol 12.5 ug/mL +0.2 +0.3 +0.2 +0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.0 +0.3 +0.7 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 -0.0 +0.7 +0.3 +0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.1 +0.5 +0.3 +0.5
nitrogen source Hydantoin (N) -0.7 +2.1 -0.1 +0.0 -0.0
nitrogen source Hydantoin (N) -0.3 +2.1 +0.0 -0.0 +0.2
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