Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2383 and Atu2384 are separated by 161 nucleotidesAtu2384 and Atu2385 are separated by 278 nucleotidesAtu2385 and Atu2386 overlap by 4 nucleotidesAtu2386 and Atu2387 are separated by 2 nucleotides Atu2383: Atu2383 - hypothetical protein, at 2,353,818 to 2,354,243 Atu2383 Atu2384: Atu2384 - transcriptional regulator, TetR family, at 2,354,405 to 2,355,046 Atu2384 Atu2385: Atu2385 - N-carbamoyl-beta-alanine amidohydrolase, at 2,355,325 to 2,356,554 Atu2385 Atu2386: Atu2386 - dihydropyrimidinase, at 2,356,551 to 2,358,008 Atu2386 Atu2387: Atu2387 - NTP pyrophosphohydrolase, MutT family, at 2,358,011 to 2,358,448 Atu2387
Group Condition Atu2383 Atu2384 Atu2385 Atu2386 Atu2387
stress Pyrogallol 0.5 mM -2.0 -0.0 -0.0 -0.0 -0.1
stress tannic 1 mM -1.4 -0.4 +0.0 -0.1 -0.1
stress Pyrogallol 0.5 mM -1.4 -0.2 -0.1 +0.0 -0.3
stress R2A with Calcium Chloride Dihydrate 87.5 mM -1.3 -0.5 +0.1 +0.1 -0.2
stress R2A with Calcium Chloride Dihydrate 87.5 mM -1.0 -0.5 -0.1 -0.1 -0.0
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.2 -0.4 -0.2 -0.5
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.7 -0.1 -0.2 -0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.7 -0.5 +0.1 +0.2
nitrogen source Orotic (N) -0.0 +0.2 -0.4 -0.4 -0.7
phage AgroPhage_C04 -0.3 -0.6 +0.1 -0.1 -0.2
stress R2A with Manganese (II) chloride tetrahydrate 5 mM -1.1 +0.0 -0.0 -0.0 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 -0.1 -0.3 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.5 -0.5 +0.1 +0.2
nitrogen source Orotic (N) -0.1 +0.4 -0.5 -0.3 -0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.6 +0.2 +0.1 -0.6
nitrogen source NAG (N) +0.2 -0.5 +0.3 +0.1 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.5 -0.5 +0.2 +0.0
carbon source DL-glyceraldehyde (C) -0.1 +0.7 -0.1 -0.3 -0.2
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.6 +0.2 +0.0 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.8 +0.4 -0.0 -0.7
no phage P2L5 -0.3 +0.6 -0.2 +0.0 +0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.3 -0.3 +0.1 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.7 -0.3 +0.1 +0.3
lb_sorghum_root LB_Sorghum_root +0.1 +0.6 -0.1 -0.2 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.7 -0.0 -0.0 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.4 +0.3 -0.2 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.6 -0.2 -0.0 +0.0
nitrogen source Hydantoin (N) +0.1 -0.1 -0.7 +2.1 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +1.3 +0.3 -0.0 -0.2
nitrogen source Hydantoin (N) +0.1 -0.3 -0.3 +2.1 +0.0
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