Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2317 and Atu2318 are separated by 145 nucleotidesAtu2318 and Atu2319 are separated by 196 nucleotidesAtu2319 and Atu2320 overlap by 4 nucleotidesAtu2320 and Atu2321 are separated by 165 nucleotides Atu2317: Atu2317 - hypothetical protein, at 2,295,279 to 2,295,875 Atu2317 Atu2318: Atu2318 - L-lactate dehydrogenase, at 2,296,021 to 2,297,169 Atu2318 Atu2319: Atu2319 - quaternary ammonium compound-resistance protein, at 2,297,366 to 2,297,710 Atu2319 Atu2320: Atu2320 - transcriptional regulator, TetR family, at 2,297,707 to 2,298,291 Atu2320 Atu2321: Atu2321 - D-alanyl-D-alanine carboxypeptidase (penicillin binding protein), at 2,298,457 to 2,299,752 Atu2321
Group Condition Atu2317 Atu2318 Atu2319 Atu2320 Atu2321
stress R2A with Strontium chloride 750 mM +0.2 -0.3 -0.0 -0.8 -3.0
phage AgroPhage_E10 -1.5 -0.2 +0.1 -1.3 -0.9
stress R2A with Magnesium sulfate 400 mM -0.2 +0.1 +0.1 -0.5 -1.8
stress R2A with Chloride 700 mM +0.1 -0.1 +0.1 -0.2 -2.1
phage AgroPhage_F10 -1.2 +0.2 -0.2 -0.5 -0.4
carbon source L-Fucose (C) +0.1 -1.4 -0.1 -0.4 +0.0
nophagecontrol No phage control -1.1 -0.0 -0.2 -0.4 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.9 -0.0 +0.1 -0.7 -0.0
phage AgroPhage_A07 -1.1 +0.1 -0.5 +0.2 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 -0.2 -0.8 +0.1
phage AgroPhage_D04 -0.6 +0.3 -0.5 -0.2 -0.4
phage AgroPhage_E04 -1.4 +0.3 +0.1 -0.1 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 +0.1 -1.2 -0.0
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.4 +0.4 -0.7 -0.1
carbon source L-Fucose (C) -0.4 -1.0 +0.1 +0.3 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 -0.6 -0.3 -0.8 -0.0
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.0 -0.4 -0.3 -0.7 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.5 +0.7 -0.3 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 -0.1 -0.2 -0.7 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.2 +0.7 -0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 -0.0 +0.3 +0.5 -0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 -0.2 +0.1 -0.6 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -0.2 +0.3 -0.8 +0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.1 -0.2 +1.0 +0.1
stress R2A with Vancomycin 0.009 mM +0.6 +0.4 -0.4 -0.2 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.4 +0.2 +0.5 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 -0.2 +0.6 -0.5 +0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 -0.2 +0.3 +0.7 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.4 +0.6 -0.1 +0.2
nitrogen source DL-2-Aminobutyric (N) +1.3 +0.0 +0.0 +0.7 +0.6
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