Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2316 and Atu2317 are separated by 29 nucleotidesAtu2317 and Atu2318 are separated by 145 nucleotidesAtu2318 and Atu2319 are separated by 196 nucleotidesAtu2319 and Atu2320 overlap by 4 nucleotides Atu2316: Atu2316 - hypothetical protein, at 2,294,578 to 2,295,249 Atu2316 Atu2317: Atu2317 - hypothetical protein, at 2,295,279 to 2,295,875 Atu2317 Atu2318: Atu2318 - L-lactate dehydrogenase, at 2,296,021 to 2,297,169 Atu2318 Atu2319: Atu2319 - quaternary ammonium compound-resistance protein, at 2,297,366 to 2,297,710 Atu2319 Atu2320: Atu2320 - transcriptional regulator, TetR family, at 2,297,707 to 2,298,291 Atu2320
Group Condition Atu2316 Atu2317 Atu2318 Atu2319 Atu2320
phage AgroPhage_E10 +0.1 -1.5 -0.2 +0.1 -1.3
phage AgroPhage_F10 -0.2 -1.2 +0.2 -0.2 -0.5
carbon source L-Fucose (C) +0.1 +0.1 -1.4 -0.1 -0.4
nophagecontrol No phage control +0.2 -1.1 -0.0 -0.2 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.9 -0.0 +0.1 -0.7
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.5 +0.2 -0.3 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 -0.4 +0.1 -1.2
phage AgroPhage_E04 +0.0 -1.4 +0.3 +0.1 -0.1
carbon source L-Fucose (C) -0.1 -0.4 -1.0 +0.1 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.6 -0.1 -0.2 -0.7
phage AgroPhage_A07 +0.4 -1.1 +0.1 -0.5 +0.2
phage AgroPhage_D04 +0.1 -0.6 +0.3 -0.5 -0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.3 -0.4 +0.4 -0.7
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.5 -0.5 +0.7 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.8 -0.6 -0.3 -0.8
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.2 -0.5 -0.4 +0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +1.0 -0.4 -0.3 -0.7
stress R2A with Lithium chloride 900 mM -0.3 +0.7 -0.1 -0.1 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.6 -0.0 +0.3 +0.5
no phage P5L5 +0.3 +0.5 +0.2 -0.0 -0.8
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.6 -0.2 +0.7 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.4 -0.0 +0.3 -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.6 -0.2 +0.3 -0.8
nitrogen source DL-2-Aminobutyric (N) -1.3 +1.3 +0.0 +0.0 +0.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.8 -0.2 +0.6 -0.5
phage AgroPhage_C10 +0.6 -0.2 -0.1 -0.2 +0.8
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.7 +0.0 +0.3 -0.4
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.6 -0.2 +0.3 +0.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.5 -0.4 +0.2 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.5 +0.4 +0.6 -0.1
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