Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2279 and Atu2280 overlap by 4 nucleotidesAtu2280 and Atu2281 are separated by 110 nucleotidesAtu2281 and Atu2282 are separated by 417 nucleotidesAtu2282 and Atu2283 are separated by 113 nucleotides Atu2279: Atu2279 - ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine), at 2,250,940 to 2,251,986 Atu2279 Atu2280: Atu2280 - ABC transporter, membrane spanning protein (proline/glycine betaine), at 2,251,983 to 2,253,014 Atu2280 Atu2281: Atu2281 - ABC transporter, substrate binding protein (proline/glycine betaine), at 2,253,125 to 2,254,078 Atu2281 Atu2282: Atu2282 - thymidine kinase, at 2,254,496 to 2,254,987 Atu2282 Atu2283: Atu2283 - pseudoazurin, at 2,255,101 to 2,255,553 Atu2283
Group Condition Atu2279 Atu2280 Atu2281 Atu2282 Atu2283
nitrogen source Choline chloride (N) -2.9 -2.7 -3.0 -0.0 -0.1
nitrogen source Choline chloride (N) -2.9 -2.7 -2.9 +0.2 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 +0.2 -0.6 -0.1 -0.7
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.2 -0.4 -0.9 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.4 -0.7 -0.3 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.0 -0.7 +0.2 -0.6
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 -0.4 -0.8 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.0 +0.0 -1.3 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.5 -0.8 +0.3 -0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.4 -0.5 -0.5 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.1 -0.7 +0.4 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.5 -0.1 -0.5 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.0 -0.8 +0.7 +0.2
phage phage 99.2 -0.5 -0.2 -0.5 +0.0 +0.6
carbon source Asolectin from soybean (C) -0.3 +0.1 -0.4 +0.6 -0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.4 -1.1 -0.6 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 -0.6 +0.5 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.2 -0.4 -0.4 +0.5 +0.5
phage AgroPhage_H04 -0.1 +0.1 +0.7 -0.4 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.2 -0.5 +0.9 -0.0
phage AgroPhage_H10 +0.5 +0.2 +0.5 -0.4 +0.3
phage AgroPhage_F10 +0.6 +0.4 +0.8 -0.3 +0.0
phage AgroPhage_D04 +0.7 +0.2 +0.8 +0.0 -0.3
stress R2A with m-arsenite 0.8 mM +0.5 +0.5 +0.4 +0.3 -0.2
phage AgroPhage_F04 +0.6 +0.5 +1.1 -0.4 -0.2
carbon source Ethyl benzoate (C) +0.4 +0.5 +0.6 +0.4 +0.2
phage AgroPhage_D10 +0.5 +0.4 +0.8 +0.7 +0.1
stress R2A with Vancomycin 0.009 mM +0.9 +0.9 +0.8 +0.0 +0.3
stress R2A with Vancomycin 0.009 mM +1.5 +1.5 +1.2 +0.7 +0.3
nitrogen source DL-2-Aminobutyric (N) +1.5 +2.1 +1.0 +0.8 +1.3
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