Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2277 and Atu2278 are separated by 119 nucleotidesAtu2278 and Atu2279 are separated by 542 nucleotidesAtu2279 and Atu2280 overlap by 4 nucleotidesAtu2280 and Atu2281 are separated by 110 nucleotides Atu2277: Atu2277 - adenylate cyclase protein, at 2,248,782 to 2,249,957 Atu2277 Atu2278: Atu2278 - transcriptional regulator, ArsR family, at 2,250,077 to 2,250,397 Atu2278 Atu2279: Atu2279 - ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine), at 2,250,940 to 2,251,986 Atu2279 Atu2280: Atu2280 - ABC transporter, membrane spanning protein (proline/glycine betaine), at 2,251,983 to 2,253,014 Atu2280 Atu2281: Atu2281 - ABC transporter, substrate binding protein (proline/glycine betaine), at 2,253,125 to 2,254,078 Atu2281
Group Condition Atu2277 Atu2278 Atu2279 Atu2280 Atu2281
nitrogen source Choline chloride (N) +0.0 -0.0 -2.9 -2.7 -2.9
nitrogen source Choline chloride (N) +0.2 +0.2 -2.9 -2.7 -3.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -1.1 -1.2 +0.2 -0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 -0.5 +0.1 -0.7
stress R2A with Tetracycline 0.002 mM -0.1 -0.9 +0.0 -0.2 -0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 -0.6 +0.0 -0.8
phage AgroPhage_C04 -0.3 -0.5 -0.4 +0.0 +0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 +0.2 -0.4 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.1 -0.5 +0.0 -0.7
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.4 -0.0 +0.1 -0.8
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.2 +0.5 +0.4 -1.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.1 -0.2 -0.2 -0.5 -0.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.4 -0.7 -0.1 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.3 -0.3 -0.3 -0.4 -0.7
phage AgroPhage_E10 -0.4 -0.5 +0.4 +0.1 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 -0.5 +0.3 -0.4 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 -0.7 +0.2 +0.0 +0.0
stress R2A with m-arsenite 0.8 mM -0.2 -0.6 +0.5 +0.5 +0.4
phage AgroPhage_E04 +0.1 -0.6 +0.5 +0.2 +0.3
phage AgroPhage_H10 -0.0 -0.4 +0.5 +0.2 +0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.0 -0.3 -0.3 +0.5 -0.1
stress R2A with m-arsenite 0.8 mM -0.2 -0.2 +0.5 +0.4 +0.5
phage AgroPhage_F10 -0.0 -0.5 +0.6 +0.4 +0.8
phage AgroPhage_D10 -0.3 +0.0 +0.5 +0.4 +0.8
phage AgroPhage_D04 +0.1 -0.1 +0.7 +0.2 +0.8
phage AgroPhage_F04 -0.1 -0.4 +0.6 +0.5 +1.1
carbon source Ethyl benzoate (C) +0.2 +0.1 +0.4 +0.5 +0.6
stress R2A with Vancomycin 0.009 mM +0.2 +0.6 +0.9 +0.9 +0.8
nitrogen source DL-2-Aminobutyric (N) +0.1 -0.3 +1.5 +2.1 +1.0
stress R2A with Vancomycin 0.009 mM -0.0 +0.8 +1.5 +1.5 +1.2
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