Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2276 and Atu2277 are separated by 286 nucleotidesAtu2277 and Atu2278 are separated by 119 nucleotidesAtu2278 and Atu2279 are separated by 542 nucleotidesAtu2279 and Atu2280 overlap by 4 nucleotides Atu2276: Atu2276 - ABC transporter, substrate binding protein (branched chain amino acid), at 2,247,389 to 2,248,495 Atu2276 Atu2277: Atu2277 - adenylate cyclase protein, at 2,248,782 to 2,249,957 Atu2277 Atu2278: Atu2278 - transcriptional regulator, ArsR family, at 2,250,077 to 2,250,397 Atu2278 Atu2279: Atu2279 - ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine), at 2,250,940 to 2,251,986 Atu2279 Atu2280: Atu2280 - ABC transporter, membrane spanning protein (proline/glycine betaine), at 2,251,983 to 2,253,014 Atu2280
Group Condition Atu2276 Atu2277 Atu2278 Atu2279 Atu2280
nitrogen source Choline chloride (N) +0.0 +0.0 -0.0 -2.9 -2.7
nitrogen source Choline chloride (N) +0.0 +0.2 +0.2 -2.9 -2.7
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 -0.0 -0.1 -0.9 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 +0.1 -0.4 -0.2 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.7 -1.1 -1.2 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.5 -0.4 -0.7 -0.1
phage AgroPhage_C04 +0.8 -0.3 -0.5 -0.4 +0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.5 -0.6 -0.1 -0.3
phage AgroPhage_E04 -0.4 +0.1 -0.6 +0.5 +0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 +0.2 -0.2 -0.3 -0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.2 -0.4 +0.2 -0.4
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 +0.0 -0.3 -0.5 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.8 -0.7 +0.2 +0.0
phage AgroPhage_D10 -0.4 -0.3 +0.0 +0.5 +0.4
phage AgroPhage_F10 -0.0 -0.0 -0.5 +0.6 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.2 -0.7 +0.2 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.8 -0.5 +0.3 -0.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.3 -0.1 -0.3 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.6 -0.1 -0.4 +0.2 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.4 -0.2 -0.1 +0.1
stress R2A with m-arsenite 0.8 mM +0.7 -0.2 -0.6 +0.5 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +1.3 -0.3 -0.3 -0.4
phage AgroPhage_F04 +0.3 -0.1 -0.4 +0.6 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +1.1 -0.2 -0.2 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +1.0 -0.3 -0.3 +0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.8 -0.1 +0.1 -0.1
stress R2A with m-arsenite 0.8 mM +1.0 -0.2 -0.2 +0.5 +0.4
stress R2A with Vancomycin 0.009 mM +0.3 +0.2 +0.6 +0.9 +0.9
stress R2A with Vancomycin 0.009 mM +0.1 -0.0 +0.8 +1.5 +1.5
nitrogen source DL-2-Aminobutyric (N) +1.4 +0.1 -0.3 +1.5 +2.1
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