Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2270 and Atu2271 are separated by 234 nucleotidesAtu2271 and Atu2272 are separated by 100 nucleotidesAtu2272 and Atu2273 are separated by 25 nucleotidesAtu2273 and Atu2274 are separated by 47 nucleotides Atu2270: Atu2270 - ATP-dependent Clp protease, proteolytic subunit, at 2,243,071 to 2,243,652 Atu2270 Atu2271: Atu2271 - urease accessory protein, at 2,243,887 to 2,244,477 Atu2271 Atu2272: Atu2272 - hypothetical protein, at 2,244,578 to 2,245,324 Atu2272 Atu2273: Atu2273 - hypothetical protein, at 2,245,350 to 2,245,814 Atu2273 Atu2274: Atu2274 - cation efflux system protein, at 2,245,862 to 2,246,764 Atu2274
Group Condition Atu2270 Atu2271 Atu2272 Atu2273 Atu2274
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 -1.2 -0.2 -1.4 -5.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -4.4 +0.5 -0.4 -1.0 -2.0
carbon source Methyl beta-D-glucopyranoside (C) -0.2 -0.0 -0.2 +0.1 -6.8
stress R2A with Manganese (II) chloride tetrahydrate 5 mM +0.2 -0.1 -0.2 +0.0 -6.9
carbon source methyl 3-keto-a-D-glucopyranoside (C) +0.1 -0.3 +0.2 -0.2 -6.7
carbon source palatinose (C) +0.0 -0.4 +0.1 -0.1 -6.3
carbon source methyl 3-keto-a-D-glucopyranoside (C) -0.2 +0.1 +0.3 -0.3 -6.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -2.4 +0.3 -0.4 -1.2 -2.6
carbon source D-Trehalose (C) +0.1 -0.0 -0.0 -0.1 -6.3
carbon source Xylobiose (C) +0.1 +0.0 +0.1 +0.2 -6.6
carbon source methyl-beta-D-xylopyranoside (C) -0.2 +0.2 -0.3 -0.0 -5.9
carbon source D-Glucose (C) -0.4 -0.0 +0.2 -0.1 -5.9
carbon source Xylobiose (C) +0.1 -0.1 -0.2 -0.3 -5.5
carbon source D-Leucrose (C) -0.2 -0.5 +0.1 -0.3 -4.9
carbon source D-Glucose (C) +0.0 +0.0 -0.1 -0.0 -5.7
carbon source Sucrose (C) +0.4 +0.0 +0.1 -0.2 -6.0
stress R2A with Manganese (II) chloride tetrahydrate 5 mM +0.6 +0.1 +0.2 -0.2 -6.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -4.5 -0.3 +0.1 +1.4 -2.2
carbon source D-Glucose (C) -0.5 +0.1 +0.2 -0.1 -5.1
carbon source Maltitol (C) -0.1 -0.3 +0.2 -0.1 -4.9
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.0 +0.6 -0.5 -5.9
carbon source Maltitol (C) -0.2 -0.1 +0.3 +0.1 -5.2
carbon source Sucrose (C) -0.1 +0.3 +0.1 +0.2 -5.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.5 -0.8 -2.1 -2.4
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 +0.6 +0.5 -0.6 -4.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.6 -0.4 -0.5 -4.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +1.0 -0.3 -0.7 -3.8
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.2 +0.7 -0.7 -0.2 -3.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +2.0 -0.2 -0.6 -3.1
nitrogen source DL-2-Aminobutyric (N) +5.1 +0.3 -0.5 -0.7 +0.2
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