Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu8025 and Atu2179 are separated by 46 nucleotidesAtu2179 and Atu2180 are separated by 152 nucleotidesAtu2180 and Atu2181 overlap by 1 nucleotidesAtu2181 and Atu2182 are separated by 221 nucleotides Atu8025: Atu8025 - hypothetical protein, at 2,154,370 to 2,154,558 Atu8025 Atu2179: Atu2179 - GGDEF family protein, at 2,154,605 to 2,155,744 Atu2179 Atu2180: Atu2180 - hypothetical protein, at 2,155,897 to 2,157,342 Atu2180 Atu2181: Atu2181 - hypothetical protein, at 2,157,342 to 2,158,574 Atu2181 Atu2182: Atu2182 - transcription elongation facto, at 2,158,796 to 2,159,272 Atu2182
Group Condition Atu8025 Atu2179 Atu2180 Atu2181 Atu2182
lb_tomato_root LB_Tomato_root -2.9 -0.2 -0.1 +0.1 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -2.5 -0.4 -0.3 +0.0 N.D.
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -2.8 -0.0 +0.2 -0.3 N.D.
nophagecontrol No phage control -2.4 +0.0 -0.0 -0.2 N.D.
phage AgroPhage_C04 -1.5 -0.3 -0.3 -0.4 N.D.
lb_sorghum f72 f505 LB_Sorghum F72 F505 -1.9 -0.3 -0.1 -0.1 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.0 -0.2 -0.1 +0.1 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -1.8 -0.4 -0.1 +0.1 N.D.
phage phage 99.2 -2.1 -0.2 -0.1 +0.3 N.D.
stress R2A with cyanide 2.5 mM -2.3 +0.2 +0.1 -0.0 N.D.
lb_tobacco_leaf LB_Tobacco_Leaf -1.2 -0.4 -0.3 -0.0 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -1.4 -0.1 -0.2 -0.1 N.D.
no phage P1L4 -1.8 -0.1 +0.1 +0.1 N.D.
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.8 -0.0 +0.1 +0.1 N.D.
lb_sorghum_root LB_Sorghum_root -1.5 -0.1 -0.1 +0.1 N.D.
phage AgroPhage_A05 -1.4 -0.1 +0.1 -0.1 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -1.6 +0.0 +0.1 -0.0 N.D.
carbon source D-Saccharic potassium salt (C) -1.6 +0.0 +0.0 +0.1 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.9 -0.4 -0.3 +0.1 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.5 +0.3 -0.2 -0.0 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.7 +0.1 +0.1 +0.0 N.D.
benthi_leaf_lb Benthi_leaf_LB -1.5 +0.0 -0.0 +0.2 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 -0.5 +0.4 +0.1 N.D.
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.4 +0.3 -0.1 +0.2 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.6 -0.2 -0.2 +0.0 N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.4 -0.1 +0.1 -0.1 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +1.4 +0.3 -0.1 -0.1 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.7 -0.1 -0.1 -0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.4 +0.1 +0.2 +0.1 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.9 -0.1 +0.0 +0.3 N.D.
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