Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2176 and Atu2177 are separated by 278 nucleotidesAtu2177 and Atu2178 are separated by 155 nucleotidesAtu2178 and Atu8025 are separated by 209 nucleotidesAtu8025 and Atu2179 are separated by 46 nucleotides Atu2176: Atu2176 - hypothetical protein, at 2,149,114 to 2,149,602 Atu2176 Atu2177: Atu2177 - hypothetical protein, at 2,149,881 to 2,150,516 Atu2177 Atu2178: Atu2178 - carbamoylphosphate synthase large subunit, at 2,150,672 to 2,154,160 Atu2178 Atu8025: Atu8025 - hypothetical protein, at 2,154,370 to 2,154,558 Atu8025 Atu2179: Atu2179 - GGDEF family protein, at 2,154,605 to 2,155,744 Atu2179
Group Condition Atu2176 Atu2177 Atu2178 Atu8025 Atu2179
phage AgroPhage_C04 -0.9 -0.2 N.D. -1.5 -0.3
stress R2A with tungstate 375 mM -0.0 +0.3 N.D. -3.3 +0.1
lb_tomato_root LB_Tomato_root +0.1 +0.2 N.D. -2.9 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.1 N.D. -2.0 -0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.0 N.D. -2.8 -0.0
stress R2A with cyanide 2.5 mM -0.0 -0.2 N.D. -2.3 +0.2
nophagecontrol No phage control +0.1 +0.2 N.D. -2.4 +0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.3 +0.5 N.D. -2.5 -0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.4 N.D. -1.4 +0.2
in planta Bethi_Library_OD0.05 +0.4 +0.2 N.D. -2.3 -0.2
lb_sorghum f72 f505 LB_Sorghum F72 F505 +0.1 +0.3 N.D. -1.9 -0.3
stress Chloramphenicol 6.25 ug/mL +0.1 -0.0 N.D. -1.7 -0.2
phage phage 99.2 +0.2 +0.4 N.D. -2.1 -0.2
phage AgroPhage_A05 -0.4 +0.2 N.D. -1.4 -0.1
no phage P1L4 +0.2 +0.4 N.D. -1.8 -0.1
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.1 N.D. -1.8 -0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 N.D. -1.7 +0.1
lb_tobacco_leaf LB_Tobacco_Leaf +0.2 +0.2 N.D. -1.2 -0.4
lb_sorghum ss 20 LB_Sorghum SS 20 +0.2 +0.3 N.D. -1.4 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.7 +0.6 N.D. -1.8 -0.4
carbon source D-Saccharic potassium salt (C) +0.5 +0.1 N.D. -1.6 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.5 N.D. -1.5 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.2 +0.5 N.D. -0.9 -0.4
lb_sorghum btx 430 LB_Sorghum Btx 430 +0.4 +0.4 N.D. -0.9 -0.3
in planta Bethi_Library_OD0.01 +0.6 +0.3 N.D. -1.0 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.5 N.D. +1.4 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.1 N.D. +1.9 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.1 N.D. +1.6 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.1 +0.5 N.D. +0.5 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 N.D. +1.7 -0.1
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