Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2173 and Atu2174 are separated by 295 nucleotidesAtu2174 and Atu2175 are separated by 41 nucleotidesAtu2175 and Atu2176 are separated by 98 nucleotidesAtu2176 and Atu2177 are separated by 278 nucleotides Atu2173: Atu2173 - methyl-accepting chemotaxis protein, at 2,145,191 to 2,147,281 Atu2173 Atu2174: Atu2174 - hypothetical protein, at 2,147,577 to 2,148,056 Atu2174 Atu2175: Atu2175 - hypothetical protein, at 2,148,098 to 2,149,015 Atu2175 Atu2176: Atu2176 - hypothetical protein, at 2,149,114 to 2,149,602 Atu2176 Atu2177: Atu2177 - hypothetical protein, at 2,149,881 to 2,150,516 Atu2177
Group Condition Atu2173 Atu2174 Atu2175 Atu2176 Atu2177
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.6 -0.3 -1.2 -0.2
carbon source L-ascorbate (C) +0.0 -2.5 +0.0 +0.2 +0.1
carbon source L-ascorbate (C) +0.1 -2.7 +0.2 +0.2 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.5 -0.8 -0.0 -0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.4 -0.8 +0.1 -0.3
phage AgroPhage_D10 -0.1 -1.2 +0.1 -0.0 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -1.0 -0.5 +0.1 +0.1
phage AgroPhage_C04 -0.1 +0.4 +0.2 -0.9 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.1 -0.3 +0.5 -0.4
carbon source methyl-alpha-D-xylopyranoside (C) +0.0 -0.5 +0.6 -0.3 -0.0
phage AgroPhage_E04 +0.3 -0.3 +0.0 -0.4 +0.4
phage AgroPhage_D04 -0.1 -0.7 +0.3 +0.4 +0.2
phage AgroPhage_B07 +0.1 -0.3 -0.4 +0.1 +0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.2 +0.2 +0.2 -0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.1 -0.6 +0.8 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 -0.1 -0.4 +0.7 -0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 +0.1 +0.5 +0.4
nitrogen source DL-2-Aminobutyric (N) -0.1 +1.3 -0.5 -0.4 +0.3
Atjh10 +0.1 +0.3 -0.4 -0.0 +0.7
Atjh2 -0.0 +0.7 -0.3 -0.2 +0.6
Atjh10 -0.1 +0.7 -0.1 -0.2 +0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.6 -0.3 -0.2 +0.9
Atjh15 -0.0 +0.5 -0.0 +0.3 +0.5
No phage control -0.2 +0.5 +0.1 +0.2 +0.8
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 +0.4 +0.7 +0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.6 +0.2 +0.3 +0.3
Atjh15 -0.0 +0.8 +0.1 +0.1 +0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 +0.1 +0.3 +0.7 +0.6
no phage P2L5 +0.2 +0.2 +0.8 +0.3 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 +0.1 +1.1 +0.5
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