Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2170 and Atu2171 are separated by 532 nucleotidesAtu2171 and Atu2172 are separated by 70 nucleotidesAtu2172 and Atu2173 are separated by 330 nucleotidesAtu2173 and Atu2174 are separated by 295 nucleotides Atu2170: Atu2170 - carbamoylphosphate synthase small chain, at 2,140,140 to 2,141,345 Atu2170 Atu2171: Atu2171 - hydrolase, at 2,141,878 to 2,143,392 Atu2171 Atu2172: Atu2172 - multidrug efflux protein, at 2,143,463 to 2,144,860 Atu2172 Atu2173: Atu2173 - methyl-accepting chemotaxis protein, at 2,145,191 to 2,147,281 Atu2173 Atu2174: Atu2174 - hypothetical protein, at 2,147,577 to 2,148,056 Atu2174
Group Condition Atu2170 Atu2171 Atu2172 Atu2173 Atu2174
carbon source L-ascorbate (C) N.D. +0.1 -0.2 +0.1 -2.7
carbon source L-ascorbate (C) N.D. -0.0 +0.2 +0.0 -2.5
phage AgroPhage_D10 N.D. -0.3 -0.3 -0.1 -1.2
phage AgroPhage_F03 N.D. -0.1 -0.2 -0.2 -0.5
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.1 -0.4 -0.2 -0.2
Atjh14 N.D. -0.4 -0.8 -0.2 +0.6
phage AgroPhage_D04 N.D. -0.3 +0.3 -0.1 -0.7
carbon source L-Galactose (C) N.D. -0.0 +0.0 +0.1 -0.9
carbon source L-Galactose (C) N.D. +0.1 +0.0 -0.1 -0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 +0.4 +0.2 -1.0
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 +0.1 -0.3 -0.6
carbon source Dihydroxyacetone (C) N.D. +0.0 +0.1 -0.1 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.0 -0.4 +0.2 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.2 -0.3 +0.4 -0.2
phage AgroPhage_B07 N.D. -0.3 +0.3 +0.1 -0.3
No phage control N.D. -0.2 -0.2 -0.2 +0.5
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.2 -0.5 -0.1 +0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 -0.5 -0.0 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 -0.2 -0.1 +0.4
Atjh2 N.D. -0.3 -0.3 -0.0 +0.6
phage phage 100.3 N.D. -0.0 -0.3 +0.1 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.3 +0.4 +0.0 +0.2
Atjh10 N.D. -0.2 -0.1 -0.1 +0.7
Atjh15 N.D. -0.3 -0.1 -0.0 +0.8
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 +0.3 +0.1 -0.3
phage AgroPhage_C04 N.D. -0.3 +0.5 -0.1 +0.4
stress Chloramphenicol 12.5 ug/mL N.D. -0.4 +0.4 +0.1 +0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 +0.2 -0.1 +0.6
nitrogen source DL-2-Aminobutyric (N) N.D. -0.4 -0.0 -0.1 +1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.5 +0.2 +0.3 -0.1
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