Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2132 and Atu2133 are separated by 153 nucleotidesAtu2133 and Atu2134 are separated by 67 nucleotidesAtu2134 and Atu2135 are separated by 43 nucleotidesAtu2135 and Atu2136 are separated by 91 nucleotides Atu2132: Atu2132 - hypothetical protein, at 2,097,174 to 2,098,007 Atu2132 Atu2133: Atu2133 - hypothetical protein, at 2,098,161 to 2,099,543 Atu2133 Atu2134: Atu2134 - MFS permease, at 2,099,611 to 2,100,819 Atu2134 Atu2135: Atu2135 - transcriptional regulator, TetR family, at 2,100,863 to 2,101,564 Atu2135 Atu2136: Atu2136 - chromosome partitioning protein, at 2,101,656 to 2,102,372 Atu2136
Group Condition Atu2132 Atu2133 Atu2134 Atu2135 Atu2136
stress R2A with Polymyxin B sulfate 0.00075 mM +0.3 -2.9 +0.2 -0.4 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 -0.1 -0.4 -0.6
carbon source L-ascorbate (C) -0.1 -0.6 +0.0 -0.4 -0.2
carbon source L-ascorbate (C) -0.0 -1.1 +0.1 -0.3 +0.2
phage AgroPhage_D04 +0.1 +0.1 +0.1 -0.1 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.3 +0.0 -1.1 +0.3
phage AgroPhage_C10 -0.5 -0.3 -0.1 +0.2 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.4 +0.3 -0.1 -0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.6 -0.1 -0.1 -0.3
stress R2A with Ceftazidime 4 mM +0.3 -1.1 +0.2 -0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 +0.3 +0.2 -0.2 -0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.6 +0.2 +0.1 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.3 -0.3 +0.6 -0.4
stress R2A with Vancomycin 0.009 mM -0.4 -0.4 +0.1 +0.5 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 +0.4 +0.2 -0.3 -0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.5 +0.2 -0.1 +0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 +0.4 -0.2 +0.3
phage AgroPhage_E10 -0.1 +0.4 -0.4 +0.4 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 +0.4 +0.3 -0.2
stress R2A with Vancomycin 0.009 mM -0.4 -0.0 +0.2 +0.9 -0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.4 +0.1 -0.5 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.3 +0.2 +0.1 +0.8
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 -0.1 +0.5 +0.2
carbon source Lactulose (C) -0.1 -0.2 +0.2 +0.4 +0.6
stress R2A with Gentamicin 0.00125 mM +0.4 -0.0 -0.1 +0.8 -0.1
pH R2A pH 5.5 -0.1 -0.3 +0.2 +0.9 +0.3
pH R2A pH 5.5 +0.1 -0.2 +0.2 +1.2 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +0.4 +0.0 +0.3 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.2 +0.3 +0.4 +0.2
carbon source sarcosine (C) +0.1 -0.1 +0.0 +2.2 -0.3
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