Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2112 and Atu2113 are separated by 247 nucleotidesAtu2113 and Atu2114 overlap by 4 nucleotidesAtu2114 and Atu2115 are separated by 334 nucleotidesAtu2115 and Atu2116 are separated by 52 nucleotides Atu2112: Atu2112 - soluble lytic transglycosylase, at 2,076,523 to 2,077,062 Atu2112 Atu2113: Atu2113 - N-acetylmuramoyl-L-alanine amidase, at 2,077,310 to 2,078,089 Atu2113 Atu2114: Atu2114 - molecular chaperone, DnaJ family, at 2,078,086 to 2,078,823 Atu2114 Atu2115: Atu2115 - pyrophosphate--fructose-6-phosphate 1-phosphotransferase, at 2,079,158 to 2,080,369 Atu2115 Atu2116: Atu2116 - hypothetical protein, at 2,080,422 to 2,081,057 Atu2116
Group Condition Atu2112 Atu2113 Atu2114 Atu2115 Atu2116
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -7.2 -0.6 -1.0 -1.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -4.9 -0.8 -0.8 -0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -3.8 -0.6 -0.9 -1.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -3.9 -0.7 -1.5 -0.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -3.9 -1.2 -0.3 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -4.1 -0.9 -1.4 +0.7
carbon source Protocatechuic Acid (C) +0.1 -0.5 -0.2 -4.8 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -2.4 -1.2 -1.6 -0.7
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -2.9 -1.8 -1.0 +0.2
carbon source Protocatechuic Acid (C) +0.1 -0.5 -0.2 -5.0 -0.0
carbon source L-Fucose (C) +0.1 -0.4 -0.2 -5.3 +0.4
carbon source D-Quinic (C) +0.0 -0.2 +0.1 -5.5 +0.2
carbon source succinate (C) -0.0 -0.2 -0.2 -4.9 +0.1
carbon source m-Inositol (C) +0.2 -0.2 -0.1 -5.0 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -3.6 +0.3 -0.9 -0.5
carbon source L-Fucose (C) +0.2 -0.7 +0.1 -5.0 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -3.4 -0.7 -0.6 -0.3
carbon source 4-Hydroxybenzoic Acid (C) +0.0 -0.5 -0.0 -3.9 -0.7
carbon source L-Galactose (C) +0.2 -0.6 -0.0 -4.4 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -4.2 +0.2 -0.5 -0.4
carbon source L-Galactose (C) +0.1 -0.3 -0.1 -4.0 -0.5
carbon source D-glutamine (C) -0.0 -0.6 +0.1 -4.3 +0.0
nitrogen source L-Histidine (N) +0.1 -0.4 +0.2 -4.6 -0.0
carbon source D-Glucuronic gamma lactone (C) +0.1 -0.0 -0.2 -4.7 +0.2
carbon source D-Galactose (C) +0.0 -0.5 -0.1 -4.2 +0.3
carbon source D-Quinic (C) +0.0 +0.2 -0.2 -4.7 +0.1
carbon source trans-aconitic (C) +0.1 +0.3 +0.2 -4.5 -0.2
carbon source D-Galactose (C) +0.3 -0.0 +0.2 -4.7 +0.2
stress R2A with Polymyxin B sulfate 0.00075 mM +0.1 -3.7 +0.2 -0.8 +0.2
carbon source DL-glyceraldehyde (C) +0.2 -1.0 +0.4 -3.3 -0.2
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