Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2090 and Atu2091 are separated by 69 nucleotidesAtu2091 and Atu2092 are separated by 201 nucleotidesAtu2092 and Atu2093 overlap by 4 nucleotidesAtu2093 and Atu2094 overlap by 4 nucleotides Atu2090: Atu2090 - ABC transporter, membrane spanning protein (sugar), at 2,052,681 to 2,053,985 Atu2090 Atu2091: Atu2091 - GGDEF family protein, at 2,054,055 to 2,054,864 Atu2091 Atu2092: Atu2092 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,055,066 to 2,056,031 Atu2092 Atu2093: Atu2093 - UDP-N-acetylmuramate-alanine ligase, at 2,056,028 to 2,057,443 Atu2093 Atu2094: Atu2094 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 2,057,440 to 2,058,576 Atu2094
Group Condition Atu2090 Atu2091 Atu2092 Atu2093 Atu2094
phage AgroPhage_F10 -0.1 -0.5 N.D. N.D. N.D.
phage AgroPhage_E10 -0.2 -0.4 N.D. N.D. N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.3 N.D. N.D. N.D.
nophagecontrol No phage control -0.0 -0.6 N.D. N.D. N.D.
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 N.D. N.D. N.D.
phage AgroPhage_B01 -0.0 -0.5 N.D. N.D. N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 N.D. N.D. N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.0 -0.5 N.D. N.D. N.D.
lb_sorghum b5 999 LB_Sorghum B5 999 +0.1 -0.5 N.D. N.D. N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.6 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 -0.5 N.D. N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.1 -0.5 N.D. N.D. N.D.
carbon source methyl-alpha-D-xylopyranoside (C) +0.1 -0.4 N.D. N.D. N.D.
lb_sorghum btx 430 LB_Sorghum Btx 430 +0.1 -0.5 N.D. N.D. N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.4 N.D. N.D. N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 N.D. N.D. N.D.
lb_benthi_root LB_Benthi_root +0.2 -0.3 N.D. N.D. N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 N.D. N.D. N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 N.D. N.D. N.D.
stress R2A with Gallium(III) chloride 0.02 mM -0.1 +0.4 N.D. N.D. N.D.
stress R2A with hypochlorite 6.25 mM -0.2 +0.5 N.D. N.D. N.D.
stress R2A with Aluminum chloride 0.3 mM -0.1 +0.4 N.D. N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.6 N.D. N.D. N.D.
stress R2A with Novobiocin 0.002 mM -0.0 +0.5 N.D. N.D. N.D.
carbon source gluconate (C) +0.1 +0.4 N.D. N.D. N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.3 N.D. N.D. N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 +0.4 N.D. N.D. N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.4 N.D. N.D. N.D.
no phage P2L5 +0.2 +0.6 N.D. N.D. N.D.
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