Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2057 and Atu2058 are separated by 296 nucleotidesAtu2058 and Atu2059 are separated by 196 nucleotidesAtu2059 and Atu2060 are separated by 110 nucleotidesAtu2060 and Atu2061 overlap by 4 nucleotides Atu2057: Atu2057 - DNA helicase II, at 2,019,745 to 2,022,219 Atu2057 Atu2058: Atu2058 - hypothetical protein, at 2,022,516 to 2,023,136 Atu2058 Atu2059: Atu2059 - transcriptional regulator, TetR family, at 2,023,333 to 2,023,926 Atu2059 Atu2060: Atu2060 - ABC transporter, substrate binding protein (glycine betaine), at 2,024,037 to 2,024,963 Atu2060 Atu2061: Atu2061 - hydrolase, at 2,024,960 to 2,025,820 Atu2061
Group Condition Atu2057 Atu2058 Atu2059 Atu2060 Atu2061
stress R2A with Bacitracin 0.6 mM -3.9 -0.7 -0.6 +0.0 -0.3
stress R2A with Cisplatin 0.0016 mM -4.7 +0.1 -0.2 -0.1 -0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -3.4 -0.5 -0.5 -0.1 -0.1
stress R2A with Nitrofurantoin 0.4 mg/mL -4.6 +0.2 -0.4 +0.0 +0.2
stress R2A with Hydrogen peroxide 0.1 mM -3.5 -0.4 -0.3 -0.1 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -3.7 -0.6 -0.1 +0.0 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -3.5 -0.1 -0.3 -0.2 -0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -3.8 +0.1 -0.1 -0.0 -0.0
stress R2A with Cisplatin 0.0016 mM -3.9 +0.0 +0.0 +0.2 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -3.6 -0.3 -0.1 +0.1 +0.2
stress R2A with Calcium Chloride Dihydrate 87.5 mM -2.1 -1.5 -0.2 +0.2 -0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -2.8 -0.5 -0.1 +0.2 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -3.4 -0.2 -0.1 +0.2 -0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -3.4 -0.2 -0.1 +0.0 +0.2
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -3.5 +0.2 -0.1 +0.0 -0.1
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -2.9 -0.6 +0.2 +0.2 -0.3
stress R2A with hypochlorite 6.25 mM -3.6 -0.3 -0.1 +0.4 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -3.7 +0.2 -0.0 +0.2 +0.1
stress R2A with Nitrofurantoin 0.4 mg/mL -3.0 -0.7 -0.1 +0.2 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -3.4 +0.3 -0.1 -0.1 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -3.7 +0.5 +0.1 +0.1 -0.0
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -2.6 +0.5 -0.1 -0.1 -0.6
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.0 -0.7 -1.0 +0.6 +0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -3.1 +0.4 +0.3 -0.1 +0.2
phage AgroPhage_D10 -0.3 +1.5 -3.0 -0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.2 +1.3 -0.5 -0.1 +0.5
phage AgroPhage_H04 +0.2 +2.4 -1.1 -0.1 +0.5
stress R2A with Vancomycin 0.009 mM -0.9 +3.5 -0.4 +0.1 -0.2
nitrogen source Choline chloride (N) -0.7 -0.2 +3.1 -0.0 +0.1
stress R2A with Vancomycin 0.009 mM +0.8 +3.7 -0.0 -0.1 +0.1
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