Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2055 and Atu2056 are separated by 224 nucleotidesAtu2056 and Atu2057 are separated by 102 nucleotidesAtu2057 and Atu2058 are separated by 296 nucleotidesAtu2058 and Atu2059 are separated by 196 nucleotides Atu2055: Atu2055 - HlyD family secretion protein, at 2,017,856 to 2,019,007 Atu2055 Atu2056: Atu2056 - hypothetical protein, at 2,019,232 to 2,019,642 Atu2056 Atu2057: Atu2057 - DNA helicase II, at 2,019,745 to 2,022,219 Atu2057 Atu2058: Atu2058 - hypothetical protein, at 2,022,516 to 2,023,136 Atu2058 Atu2059: Atu2059 - transcriptional regulator, TetR family, at 2,023,333 to 2,023,926 Atu2059
Group Condition Atu2055 Atu2056 Atu2057 Atu2058 Atu2059
stress R2A with Cisplatin 0.0016 mM -0.1 +0.1 -4.7 +0.1 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.3 -3.4 -0.5 -0.5
stress R2A with Bacitracin 0.6 mM +0.4 +0.1 -3.9 -0.7 -0.6
stress R2A with Nitrofurantoin 0.4 mg/mL +0.3 +0.0 -4.6 +0.2 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.1 -3.6 -0.3 -0.1
stress R2A with Hydrogen peroxide 0.1 mM +0.1 -0.2 -3.5 -0.4 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 +0.1 -3.7 -0.6 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 +0.4 -3.4 -0.2 -0.1
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.4 -3.4 -0.3 +0.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.2 -2.0 -0.7 -1.0
stress R2A with hypochlorite 6.25 mM +0.4 -0.1 -3.6 -0.3 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 +0.3 -3.5 -0.1 -0.3
stress R2A with Calcium Chloride Dihydrate 87.5 mM +0.3 -0.1 -2.1 -1.5 -0.2
stress R2A with Nitrofurantoin 0.4 mg/mL +0.3 -0.2 -3.0 -0.7 -0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.1 -3.8 +0.1 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.0 +0.4 -3.7 +0.2 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.0 +0.5 -3.4 -0.2 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.4 +0.5 -3.2 -0.0 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.4 +0.8 -3.7 +0.5 +0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.1 -2.9 +0.4 -0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.4 +0.1 -3.1 +0.4 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +1.3 -2.5 +0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 -0.2 -2.2 +1.3 -0.5
phage AgroPhage_D10 -0.3 +0.8 -0.3 +1.5 -3.0
phage AgroPhage_H04 -0.3 +0.5 +0.2 +2.4 -1.1
nitrogen source Choline chloride (N) -0.1 -0.3 -0.7 -0.2 +3.1
nitrogen source Choline chloride (N) +0.2 -0.2 -0.5 -0.3 +3.0
stress R2A with Vancomycin 0.009 mM +0.3 -0.0 -0.9 +3.5 -0.4
stress R2A with tungstate 375 mM +0.4 +0.7 -0.7 +1.8 +0.7
stress R2A with Vancomycin 0.009 mM +0.1 -0.4 +0.8 +3.7 -0.0
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