Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2042 and Atu2043 are separated by 89 nucleotidesAtu2043 and Atu2044 are separated by 192 nucleotidesAtu2044 and Atu2045 are separated by 1 nucleotidesAtu2045 and Atu2046 are separated by 143 nucleotides Atu2042: Atu2042 - short chain dehydrogenase, at 2,000,568 to 2,001,317 Atu2042 Atu2043: Atu2043 - htrA family protein, at 2,001,407 to 2,002,951 Atu2043 Atu2044: Atu2044 - HFLC protein, at 2,003,144 to 2,004,067 Atu2044 Atu2045: Atu2045 - HFLK protein, at 2,004,069 to 2,005,187 Atu2045 Atu2046: Atu2046 - dihydrofolate reductase, at 2,005,331 to 2,005,858 Atu2046
Group Condition Atu2042 Atu2043 Atu2044 Atu2045 Atu2046
stress R2A with Vancomycin 0.009 mM -0.1 -1.3 -2.7 -3.5 N.D.
stress R2A with Vancomycin 0.009 mM +0.1 -0.9 -2.9 -3.0 N.D.
stress R2A with Gentamicin 0.00125 mM +0.1 -0.3 -3.2 -2.6 N.D.
stress R2A with Gentamicin 0.00125 mM +0.3 -0.1 -2.2 -2.1 N.D.
stress R2A with Tetracycline 0.002 mM -0.0 -0.2 -1.3 -1.9 N.D.
carbon source Protocatechuic Acid (C) +0.1 -0.0 -1.4 -1.9 N.D.
phage AgroPhage_E04 +0.2 -1.0 -1.1 -1.3 N.D.
stress R2A with Strontium chloride 750 mM +0.3 -0.4 -1.5 -1.4 N.D.
carbon source D-Mannose (C) +0.0 -0.1 -1.3 -1.5 N.D.
carbon source Protocatechuic Acid (C) -0.1 -0.0 -1.1 -1.6 N.D.
carbon source Fumarate (C) -0.1 +0.0 -1.2 -1.5 N.D.
carbon source L-Alanine (C) +0.1 +0.0 -1.5 -1.3 N.D.
carbon source succinate (C) -0.1 -0.2 -1.1 -1.3 N.D.
carbon source D-Glucose (C) -0.0 -0.1 -1.2 -1.4 N.D.
carbon source Fumarate (C) -0.2 +0.0 -1.1 -1.3 N.D.
carbon source L-Arabinose (C) +0.0 -0.1 -1.1 -1.4 N.D.
carbon source acetate (C) -0.0 -0.0 -1.3 -1.2 N.D.
carbon source D-Xylose (C) -0.1 -0.2 -1.0 -1.3 N.D.
stress R2A with rubidium chloride 600 mM -0.1 -0.0 -1.3 -1.3 N.D.
lb LB +0.1 -0.1 -1.2 -1.3 N.D.
lb LB -0.2 +0.0 -1.4 -1.0 N.D.
carbon source D-Glucose (C) +0.1 -0.0 -1.1 -1.5 N.D.
carbon source acetate (C) +0.0 -0.1 -1.2 -1.2 N.D.
carbon source succinate (C) +0.2 -0.1 -1.3 -1.2 N.D.
carbon source D-Xylose (C) +0.3 -0.0 -1.0 -1.5 N.D.
carbon source D-Ribose (C) +0.2 +0.0 -1.3 -1.0 N.D.
carbon source D-Mannitol (C) +0.3 -0.0 -1.1 -1.3 N.D.
stress R2A with Tetracycline 0.002 mM +0.4 -0.0 -1.0 -1.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -0.7 -0.7 -0.7 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.0 -0.1 -0.7 -0.7 N.D.
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