Fitness for 5 genes in Agrobacterium fabrum C58

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Top 30 experiments (either direction), sorted by average fitness

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500 ntAtu2030 and Atu2031 overlap by 4 nucleotidesAtu2031 and Atu2032 are separated by 179 nucleotidesAtu2032 and Atu2033 are separated by 139 nucleotidesAtu2033 and Atu2034 overlap by 8 nucleotides Atu2030: Atu2030 - ECF family sigma factor, at 1,989,909 to 1,990,445 Atu2030 Atu2031: Atu2031 - hypothetical protein, at 1,990,442 to 1,991,230 Atu2031 Atu2032: Atu2032 - aldo/keto reductase, at 1,991,410 to 1,992,255 Atu2032 Atu2033: Atu2033 - hypothetical protein, at 1,992,395 to 1,992,928 Atu2033 Atu2034: Atu2034 - transcriptional regulator, ArsR family, at 1,992,921 to 1,993,289 Atu2034
Group Condition Atu2030 Atu2031 Atu2032 Atu2033 Atu2034
phage AgroPhage_A07 +0.1 -0.2 -0.0 -1.4 -0.8
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.3 -0.2 -0.2 -0.7
phage AgroPhage_D10 -0.3 -0.4 +0.1 -0.7 -0.1
phage phage 95.1 +0.2 -0.4 -0.1 -1.0 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.4 -0.3 -0.2 -0.9
carbon source L-ascorbate (C) +0.3 -1.0 -0.0 -0.6 +0.2
nophagecontrol No phage control -0.5 +0.5 -0.3 -0.7 -0.0
phage AgroPhage_E10 -0.3 +0.1 +0.0 -1.6 +0.7
stress syringaldehyde 0.5 mM -0.2 -0.2 +0.0 +0.3 -0.8
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.4 +0.2 -0.2 -0.8
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.2 +0.3 -0.4 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.1 -0.2 +1.1 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.3 +0.0 +0.3 +0.5 -0.5
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.3 -0.1 +0.3 -0.6
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.2 +0.2 +0.5 -0.8
nitrogen source DL-2-Aminobutyric (N) -0.3 +0.1 +0.4 +0.5 -0.5
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.2 -0.5 +0.6 +0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.5 -0.4 +0.2 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.1 +0.3 +0.5 +0.4
carbon source L-Galactose (C) +0.3 -0.4 +0.1 +0.4 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +1.2 +0.4 -0.7 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 +0.0 +1.0 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +0.5 -0.4 -0.1 +1.3
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 -0.3 +0.2 +0.4 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +1.0 -0.5 +0.6 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.8 -0.2 +0.1 +0.7
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.3 +0.3 +0.4 +0.8
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 +0.1 +0.3 +0.8
stress R2A with Vancomycin 0.009 mM +0.3 +1.1 -0.1 +0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.4 +0.4 +0.6 +0.3
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