Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2028 and Atu2029 are separated by 119 nucleotidesAtu2029 and Atu2030 are separated by 4 nucleotidesAtu2030 and Atu2031 overlap by 4 nucleotidesAtu2031 and Atu2032 are separated by 179 nucleotides Atu2028: Atu2028 - transcriptional regulator, ArsR family, at 1,989,030 to 1,989,404 Atu2028 Atu2029: Atu2029 - hypothetical protein, at 1,989,524 to 1,989,904 Atu2029 Atu2030: Atu2030 - ECF family sigma factor, at 1,989,909 to 1,990,445 Atu2030 Atu2031: Atu2031 - hypothetical protein, at 1,990,442 to 1,991,230 Atu2031 Atu2032: Atu2032 - aldo/keto reductase, at 1,991,410 to 1,992,255 Atu2032
Group Condition Atu2028 Atu2029 Atu2030 Atu2031 Atu2032
stress R2A with Tetracycline 0.002 mM -0.6 -0.4 -0.0 -0.6 -0.1
carbon source p-Coumaric (C) -0.9 -0.3 +0.1 -0.3 -0.1
phage AgroPhage_F10 -1.5 +0.1 -0.2 +0.3 -0.2
phage AgroPhage_B07 -0.1 -0.8 -0.5 -0.1 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.5 -0.8 -0.1 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.4 +0.3 +0.1 -0.0 -0.0
phage AgroPhage_H03 -1.0 +0.1 -0.2 +0.3 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.1 +0.3 -0.2 -0.1 -0.0
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 +0.2 -0.3 +0.5 -0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.2 +0.6 -0.1 -0.2 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 +0.4 +0.2 -0.6 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 +0.2 -0.3 +0.4 -0.3
carbon source L-ascorbate (C) +0.4 -0.0 +0.3 -1.0 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.7 -0.4 -0.1 -0.5 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 -0.8 +0.3 +0.0 -0.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 +1.0 +0.1 -0.2 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -1.1 -0.4 +1.2 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 +1.0 +0.5 -0.2 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.2 -0.1 +1.0 -0.5
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 -0.2 -0.6 +0.3 +0.3
nophagecontrol No phage control +0.1 +0.7 -0.5 +0.5 -0.3
phage AgroPhage_E04 +1.1 -0.3 -0.0 -0.5 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 +1.0 -0.3 +0.8 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.0 +0.3 +0.1 -0.2 -0.2
phage AgroPhage_D10 +1.0 +0.7 -0.3 -0.4 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.9 +0.4 -0.2 +0.0 +0.3
phage AgroPhage_D07 +0.3 +0.7 -0.0 -0.1 +0.6
phage AgroPhage_C04 +1.1 +0.6 -0.0 -0.0 -0.1
phage AgroPhage_D04 +0.6 +0.5 +0.3 +0.3 -0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.4 +0.1 +0.0 +0.1 +0.1
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