Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2021 and Atu2022 are separated by 189 nucleotidesAtu2022 and Atu2023 are separated by 66 nucleotidesAtu2023 and Atu2024 are separated by 72 nucleotidesAtu2024 and Atu2025 are separated by 234 nucleotides Atu2021: Atu2021 - transcriptional regulator, AraC family, at 1,982,112 to 1,983,017 Atu2021 Atu2022: Atu2022 - NADP-dependent alcohol dehydrogenase, at 1,983,207 to 1,984,253 Atu2022 Atu2023: Atu2023 - NADH dehydrogenase, at 1,984,320 to 1,985,585 Atu2023 Atu2024: Atu2024 - pyridoxal phosphate biosynthesis protein, at 1,985,658 to 1,986,413 Atu2024 Atu2025: Atu2025 - transcriptional regulator, at 1,986,648 to 1,987,343 Atu2025
Group Condition Atu2021 Atu2022 Atu2023 Atu2024 Atu2025
carbon source D-Arabinose (C) -0.8 -1.4 +0.0 N.D. -0.3
carbon source D-Arabinose (C) -1.1 -1.3 +0.1 N.D. -0.1
carbon source L-Xylose (C) -0.6 -0.5 +0.1 N.D. -0.6
stress R2A with Vancomycin 0.009 mM +0.1 -0.2 -0.6 N.D. -0.7
carbon source DL-glyceraldehyde (C) -0.6 -1.0 +0.1 N.D. +0.1
nitrogen source L-Leucine (N) -0.0 +0.0 -1.1 N.D. -0.2
nitrogen source L-Leucine (N) -0.3 +0.1 -0.8 N.D. -0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 -0.0 +0.4 N.D. -1.0
carbon source DL-glyceraldehyde (C) -0.5 -0.7 +0.3 N.D. -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 +0.0 +0.4 N.D. -0.6
stress R2A with sodium iodate 30 mM -0.8 -0.2 +0.0 N.D. +0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.4 +0.1 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +0.3 +0.1 N.D. -0.6
phage phage 100.3 -0.5 -0.1 -0.3 N.D. +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.7 -0.3 +0.2 N.D. -0.7
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 -0.4 +0.0 N.D. -0.4
phage AgroPhage_C10 +0.6 +0.3 -0.3 N.D. -0.5
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.7 -0.1 +0.1 N.D. -0.5
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.2 +0.3 +0.1 N.D. +1.0
nitrogen source DL-2-Aminobutyric (N) -0.3 -0.2 -0.0 N.D. +1.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 +0.5 -0.0 N.D. -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 -0.3 +0.1 N.D. +0.3
phage AgroPhage_C04 -0.5 +0.2 -0.1 N.D. +1.3
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 -0.2 +0.2 N.D. +0.6
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 +0.1 N.D. +1.2
phage AgroPhage_A07 +0.9 -0.1 -0.2 N.D. +0.6
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.1 +0.1 +0.1 N.D. +0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.0 +0.2 -0.1 N.D. +0.4
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.4 +0.8 N.D. +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.0 +0.0 +0.5 N.D. +0.3
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