Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2017 and Atu2018 overlap by 4 nucleotidesAtu2018 and Atu2019 are separated by 138 nucleotidesAtu2019 and Atu2020 are separated by 47 nucleotidesAtu2020 and Atu2021 are separated by 399 nucleotides Atu2017: Atu2017 - hypothetical protein, at 1,979,333 to 1,979,602 Atu2017 Atu2018: Atu2018 - hypothetical protein, at 1,979,599 to 1,979,853 Atu2018 Atu2019: Atu2019 - ketol-acid reductoisomerase, at 1,979,992 to 1,981,011 Atu2019 Atu2020: Atu2020 - transcriptional regulator, TetR family, at 1,981,059 to 1,981,712 Atu2020 Atu2021: Atu2021 - transcriptional regulator, AraC family, at 1,982,112 to 1,983,017 Atu2021
Group Condition Atu2017 Atu2018 Atu2019 Atu2020 Atu2021
carbon source m-Inositol (C) -1.0 N.D. N.D. -3.8 +0.1
carbon source L-Galactose (C) -0.2 N.D. N.D. -3.7 -0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -3.2 N.D. N.D. -0.5 -0.2
carbon source Asolectin from soybean (C) -3.3 N.D. N.D. -0.4 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -2.7 N.D. N.D. -0.2 -0.5
carbon source 4-Hydroxybenzoic Acid (C) -0.1 N.D. N.D. -2.5 -0.7
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -3.3 N.D. N.D. -0.1 +0.2
carbon source m-Inositol (C) +0.1 N.D. N.D. -3.1 -0.0
carbon source D,L-Malic Acid (C) -1.0 N.D. N.D. -1.9 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -3.5 N.D. N.D. +0.4 +0.2
carbon source L-Galactose (C) +0.0 N.D. N.D. -3.4 +0.4
carbon source 4-Hydroxybenzoic Acid (C) -0.9 N.D. N.D. -2.0 -0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -3.5 N.D. N.D. +0.3 +0.3
nitrogen source L-Glutamine (N) +0.0 N.D. N.D. -2.5 -0.4
carbon source Protocatechuic Acid (C) +0.4 N.D. N.D. -3.0 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.2 N.D. N.D. -1.2 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -2.8 N.D. N.D. -0.3 +0.4
nitrogen source L-Histidine (N) +0.4 N.D. N.D. -2.7 -0.3
phage AgroPhage_C04 -2.5 N.D. N.D. +0.4 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -3.4 N.D. N.D. +0.9 -0.1
phage phage 99.2 -2.5 N.D. N.D. +0.2 -0.2
carbon source Fumarate (C) +0.6 N.D. N.D. -2.9 -0.1
phage AgroPhage_D10 -2.6 N.D. N.D. +0.3 -0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -3.3 N.D. N.D. +0.2 +1.0
carbon source Fumarate (C) +0.8 N.D. N.D. -2.7 -0.0
carbon source Protocatechuic Acid (C) +0.6 N.D. N.D. -2.2 -0.3
phage AgroPhage_A07 -1.7 N.D. N.D. +0.4 +0.9
carbon source sarcosine (C) +0.2 N.D. N.D. +2.6 -0.4
carbon source D-Saccharic potassium salt (C) +0.2 N.D. N.D. +4.5 -0.0
carbon source D-Saccharic potassium salt (C) +0.5 N.D. N.D. +4.1 +0.4
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