Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2010 and Atu2011 are separated by 31 nucleotidesAtu2011 and Atu2012 are separated by 209 nucleotidesAtu2012 and Atu2013 overlap by 13 nucleotidesAtu2013 and Atu2014 are separated by 9 nucleotides Atu2010: Atu2010 - GGDEF family protein, at 1,970,408 to 1,972,147 Atu2010 Atu2011: Atu2011 - hypothetical protein, at 1,972,179 to 1,973,138 Atu2011 Atu2012: Atu2012 - ABC transporter, nucleotide binding/ATPase protein, at 1,973,348 to 1,974,376 Atu2012 Atu2013: Atu2013 - ABC transporter, membrane spanning protein, at 1,974,364 to 1,976,058 Atu2013 Atu2014: Atu2014 - ABC transporter, substrate binding protein, at 1,976,068 to 1,977,051 Atu2014
Group Condition Atu2010 Atu2011 Atu2012 Atu2013 Atu2014
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.6 -0.3 -0.3 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.7 -0.1 -0.2 -0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.8 -0.4 +0.1 -0.2 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.7 -0.5 +0.3 -0.3 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.7 -0.3 -0.0 -0.1 +0.2
carbon source L-ascorbate (C) -1.6 +0.2 +0.1 +0.1 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.7 -0.3 -0.1 -0.1 +0.2
carbon source L-ascorbate (C) -1.3 -0.2 +0.2 +0.2 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.7 -0.9 +0.4 -0.2 +0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.2 +0.2 -0.1 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.9 +0.2 -0.0 +0.2 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.8 -0.2 +0.3 -0.0 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.4 +0.3 -0.1 +0.1
phage AgroPhage_D10 +0.2 -0.5 -0.5 +0.2 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.5 +0.0 +0.1 +0.2
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 +0.2 -0.6 -0.2
nophagecontrol No phage control +0.1 -0.9 +0.4 +0.1 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.6 +0.1 +0.3 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 +0.2 +0.5 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.6 +0.2 +0.5 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.3 +0.1 +0.1 +0.7
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 +0.3 +0.2 +0.5 -0.0
nitrogen source DL-2-Aminobutyric (N) -0.6 -0.1 +0.9 +0.4 +0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.4 +0.5 -0.3 +0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.3 +0.3 +0.3 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 -0.1 +0.8 -0.2 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.0 +0.2 +0.3 +0.6
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.2 +0.2 +0.3 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +0.3 +0.1 +0.2 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 +0.4 +0.7 +0.0
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