Fitness for 5 genes in Agrobacterium fabrum C58

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Atu2009	Atu2010	Atu2011	Atu2012	Atu2013
in planta	Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.2	-0.7	-0.3	-0.3
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.4	-0.8	-0.1	-0.2
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.7	-0.9	+0.4	-0.2
carbon source	L-ascorbate (C)	N.D.	-1.6	+0.2	+0.1	+0.1
in planta	Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.8	-0.4	+0.1	-0.2
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.7	-0.3	-0.0	-0.1
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.9	-0.1	+0.0	-0.2
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.7	-0.3	-0.1	-0.1
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.7	-0.5	+0.3	-0.3
carbon source	L-ascorbate (C)	N.D.	-1.3	-0.2	+0.2	+0.2
in planta	Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.2	-0.6	+0.1	-0.3
in planta	Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	N.D.	-0.7	-0.2	+0.2	-0.1
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.8	-0.2	+0.3	-0.0
in planta	Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.5	-0.4	+0.3	-0.1
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	N.D.	-0.5	-0.6	+0.1	+0.3
phage	AgroPhage_D10	N.D.	+0.2	-0.5	-0.5	+0.2
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.2	-0.7	+0.3	+0.0
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days	N.D.	-0.9	+0.2	-0.0	+0.2
nophagecontrol	No phage control	N.D.	+0.1	-0.9	+0.4	+0.1
in planta	Bethi_Library_OD1.0	N.D.	-0.4	-0.3	+0.3	+0.2
in planta	Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.4	-0.5	+0.2	+0.5
in planta	Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.5	+0.2	-0.1	+0.4
in planta	Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	N.D.	-0.2	+0.4	+0.5	-0.4
in planta	Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	N.D.	+0.2	-0.4	+0.5	+0.1
nitrogen source	DL-2-Aminobutyric (N)	N.D.	-0.6	-0.1	+0.9	+0.4
in planta	Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	N.D.	-0.5	+0.3	+0.2	+0.5
in planta	Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	N.D.	+0.3	-0.3	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.5	-0.1	+0.8	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.8	+0.3	+0.1	+0.2
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	N.D.	+0.4	+0.3	+0.4	+0.7