Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1999 and Atu2000 are separated by 157 nucleotidesAtu2000 and Atu2001 are separated by 125 nucleotidesAtu2001 and Atu2002 are separated by 78 nucleotidesAtu2002 and Atu2003 are separated by 33 nucleotides Atu1999: Atu1999 - hypothetical protein, at 1,961,564 to 1,962,175 Atu1999 Atu2000: Atu2000 - hypothetical protein, at 1,962,333 to 1,962,716 Atu2000 Atu2001: Atu2001 - excinuclease ABC subunit B, at 1,962,842 to 1,965,808 Atu2001 Atu2002: Atu2002 - esterase/lipase, at 1,965,887 to 1,966,855 Atu2002 Atu2003: Atu2003 - hypothetical protein, at 1,966,889 to 1,967,314 Atu2003
Group Condition Atu1999 Atu2000 Atu2001 Atu2002 Atu2003
stress R2A with Cisplatin 0.0016 mM +0.0 +0.1 -2.6 +0.2 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.3 +0.0 -1.4 -0.7 +0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 -0.0 -1.4 -0.6 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.2 +0.0 -2.1 +0.0 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.1 -0.1 -2.1 +0.1 -0.0
stress R2A with Cisplatin 0.0016 mM +0.0 +0.0 -2.5 +0.2 +0.1
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.2 +0.0 -2.1 +0.1 -0.0
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.1 -2.2 +0.2 +0.2
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.1 -1.8 -0.2 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.1 -0.0 -2.1 +0.0 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.1 -2.2 -0.1 +0.3
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.2 -2.1 +0.0 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.2 +0.1 -2.1 +0.2 +0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.1 +0.2 -2.0 +0.0 +0.1
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 +0.3 -1.9 -0.0 +0.1
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.1 +0.0 -1.9 +0.2 +0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 -1.2 -0.5 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.0 -1.8 +0.2 +0.4
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.0 +0.1 -1.9 +0.3 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.1 -2.1 +0.4 +0.2
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.1 +0.0 -1.9 +0.3 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.1 +0.0 -1.9 +0.4 +0.2
stress R2A with Nitrofurantoin 0.4 mg/mL -0.2 -0.2 -1.4 +0.6 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.3 +0.1 -2.1 +0.6 +0.1
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.0 +0.2 -1.6 +0.2 +0.4
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.2 +0.2 -1.6 +0.5 +0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.2 -1.6 +0.4 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 -1.2 -0.2 +0.9
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.2 -0.9 +1.3 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +0.7 -0.3 -0.2 -0.2
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