Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1984 and Atu1985 are separated by 4 nucleotidesAtu1985 and Atu1986 overlap by 4 nucleotidesAtu1986 and Atu1987 are separated by 209 nucleotidesAtu1987 and Atu1988 are separated by 53 nucleotides Atu1984: Atu1984 - two component sensor kinase, at 1,949,267 to 1,950,307 Atu1984 Atu1985: Atu1985 - two component response regulator, at 1,950,312 to 1,950,749 Atu1985 Atu1986: Atu1986 - two component sensor kinase, at 1,950,746 to 1,952,200 Atu1986 Atu1987: Atu1987 - two component response regulator, at 1,952,410 to 1,952,784 Atu1987 Atu1988: Atu1988 - two component sensor kinase, at 1,952,838 to 1,953,830 Atu1988
Group Condition Atu1984 Atu1985 Atu1986 Atu1987 Atu1988
pH R2A pH 5.5 -0.1 -0.7 -0.0 -0.3 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.5 +0.2 -0.6 -0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.6 -0.1 +0.1 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.4 -0.2 +0.4 -0.1
Atjh14 -0.1 -0.1 +0.3 -0.1 -0.7
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 -0.9 -0.0 -0.6 +0.0
phage AgroPhage_B07 -0.4 -0.4 +0.5 +0.3 -0.0
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.4 +0.0 -0.4 +0.3
carbon source D-Saccharic potassium salt (C) +0.4 -0.5 +0.4 +0.0 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.5 +0.2 -0.1 +0.2 +0.3
carbon source NAG (C) +0.3 -0.6 +0.4 +0.2 -0.1
carbon source NAG (C) +0.4 -0.3 +0.3 +0.1 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.1 +0.6 +0.2 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.6 +0.3 +0.3 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.8 +0.0 -0.4 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 +0.0 +0.3 +0.4 +0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.5 -0.4 +0.2 +0.3
phage AgroPhage_E10 +0.5 -0.5 +0.3 +0.1 +0.2
phage AgroPhage_E04 +0.2 -0.4 +0.5 +0.1 +0.3
no phage P2L5 -0.0 +0.6 -0.3 +0.2 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.1 +0.2 +0.4 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.1 -0.2 +0.4 +0.4 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.8 +0.2 -0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 +0.7 +0.2 -0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.1 -0.2 +0.1 +0.1 +0.2
stress Chloramphenicol 12.5 ug/mL +0.5 -0.4 +0.3 +0.7 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +1.0 +0.1 +0.2 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.2 +0.3 +0.6 +0.7
nitrogen source DL-2-Aminobutyric (N) +2.0 -0.2 +0.4 +0.8 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +4.4 +0.3 +0.2 +0.1
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