Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1982 and Atu1983 overlap by 4 nucleotidesAtu1983 and Atu1984 are separated by 84 nucleotidesAtu1984 and Atu1985 are separated by 4 nucleotidesAtu1985 and Atu1986 overlap by 4 nucleotides Atu1982: Atu1982 - sigma factor, at 1,947,933 to 1,948,475 Atu1982 Atu1983: Atu1983 - hypothetical protein, at 1,948,472 to 1,949,182 Atu1983 Atu1984: Atu1984 - two component sensor kinase, at 1,949,267 to 1,950,307 Atu1984 Atu1985: Atu1985 - two component response regulator, at 1,950,312 to 1,950,749 Atu1985 Atu1986: Atu1986 - two component sensor kinase, at 1,950,746 to 1,952,200 Atu1986
Group Condition Atu1982 Atu1983 Atu1984 Atu1985 Atu1986
stress R2A with Chloride 700 mM +0.2 -1.4 -0.0 +0.1 -0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.1 -0.2 -0.4 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.6 -0.6 -0.4 -0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.4 -0.5 -0.6 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.1 +0.8 -0.9 -0.0
stress R2A with Tetracycline 0.002 mM -0.3 -0.7 +0.3 +0.2 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.7 -0.4 -0.3 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.1 -0.4 -0.1 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 -0.2 -0.4 +0.6
phage AgroPhage_H04 -0.0 +0.6 -0.1 -0.6 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 +0.7 -0.5 +0.0 +0.3
phage AgroPhage_B07 +0.1 +0.4 -0.4 -0.4 +0.5
phage AgroPhage_F04 -0.2 +0.7 -0.3 -0.2 +0.2
no phage P2L5 -0.3 +0.3 -0.0 +0.6 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.8 -0.3 -0.2 -0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 +0.7 +0.1 -0.2 +0.3
phage AgroPhage_B01 -0.3 +0.7 +0.0 -0.2 +0.4
phage AgroPhage_E04 -0.2 +0.7 +0.2 -0.4 +0.5
phage AgroPhage_E10 -0.2 +0.7 +0.5 -0.6 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.3 +0.1 +0.8 +0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.7 -0.1 -0.5 +0.2
carbon source L-ascorbate (C) -0.1 +1.0 +0.1 +0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 -0.3 +0.3 +0.7 +0.2
carbon source L-ascorbate (C) -0.2 +1.2 +0.2 +0.1 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.7 +0.4 +0.2 +0.3
stress R2A with Vancomycin 0.009 mM +0.0 +0.8 +0.1 +0.5 -0.1
stress R2A with Vancomycin 0.009 mM +0.5 +1.2 -0.2 +0.3 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.3 -0.1 +1.0 +0.1
nitrogen source DL-2-Aminobutyric (N) +0.4 +0.6 +2.0 -0.2 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.0 +0.2 +4.4 +0.3
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