Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1980 and Atu1981 are separated by 40 nucleotidesAtu1981 and Atu1982 are separated by 125 nucleotidesAtu1982 and Atu1983 overlap by 4 nucleotidesAtu1983 and Atu1984 are separated by 84 nucleotides Atu1980: Atu1980 - hypothetical protein, at 1,946,958 to 1,947,335 Atu1980 Atu1981: Atu1981 - hypothetical protein, at 1,947,376 to 1,947,807 Atu1981 Atu1982: Atu1982 - sigma factor, at 1,947,933 to 1,948,475 Atu1982 Atu1983: Atu1983 - hypothetical protein, at 1,948,472 to 1,949,182 Atu1983 Atu1984: Atu1984 - two component sensor kinase, at 1,949,267 to 1,950,307 Atu1984
Group Condition Atu1980 Atu1981 Atu1982 Atu1983 Atu1984
phage AgroPhage_A05 -1.0 -0.0 -0.4 -0.2 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.9 +0.2 -0.3 +0.1 -0.5
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.5 -0.1 +0.1 +0.2 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.5 +0.0 +0.1 +0.1 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.0 +0.0 -0.2 +0.3 -0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.9 -0.1 +0.3 +0.1 +0.6
phage AgroPhage_A07 -0.9 -0.3 +0.2 +0.5 -0.4
stress R2A with Chloride 700 mM +0.2 +0.1 +0.2 -1.4 -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.1 -0.3 +0.6 -0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 +0.3 +0.2 +0.0 +0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.1 -0.0 -0.0 +0.3 +0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.3 +0.2 +0.2 +0.4 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.8 +0.4 -0.0 +0.3 -0.3
carbon source D-Maltose (C) +0.6 +0.1 +0.1 -0.8 -0.3
phage AgroPhage_E10 -0.7 +0.0 -0.2 +0.7 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.9 +0.0 +0.5 +0.7 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.3 -0.3 +0.7 +0.4
carbon source Cellopentaose (C) +0.9 -0.0 +0.2 -0.7 +0.0
carbon source D-Sorbitol (C) +0.9 +0.0 +0.0 -0.8 +0.3
phage AgroPhage_E04 +0.5 -0.3 -0.2 +0.7 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 -0.3 -0.5 +0.1 +0.8
no phage P1L4 +1.1 +0.2 -0.2 +0.4 -0.3
phage AgroPhage_D04 +0.7 +0.2 -0.2 +0.6 -0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.3 -0.1 +0.1 +0.4 -0.5
stress R2A with Vancomycin 0.009 mM +0.0 -0.0 +0.5 +1.2 -0.2
carbon source L-ascorbate (C) +0.4 +0.0 -0.2 +1.2 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.0 +0.4 -0.0 +0.8 -0.4
stress R2A with Vancomycin 0.009 mM +0.9 +0.1 +0.0 +0.8 +0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.1 -0.1 -0.1 +0.7 +0.6
nitrogen source DL-2-Aminobutyric (N) +3.2 +0.2 +0.4 +0.6 +2.0
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