Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1977 and Atu1978 overlap by 4 nucleotidesAtu1978 and Atu1979 overlap by 14 nucleotidesAtu1979 and Atu1980 are separated by 27 nucleotidesAtu1980 and Atu1981 are separated by 40 nucleotides Atu1977: Atu1977 - amine oxidase, flavin-containing, at 1,943,523 to 1,944,896 Atu1977 Atu1978: Atu1978 - hypothetical protein, at 1,944,893 to 1,945,711 Atu1978 Atu1979: Atu1979 - cyclopropane-fatty-acyl-phospholipid synthase, at 1,945,698 to 1,946,930 Atu1979 Atu1980: Atu1980 - hypothetical protein, at 1,946,958 to 1,947,335 Atu1980 Atu1981: Atu1981 - hypothetical protein, at 1,947,376 to 1,947,807 Atu1981
Group Condition Atu1977 Atu1978 Atu1979 Atu1980 Atu1981
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.1 -0.1 -1.9 -0.1
phage AgroPhage_A05 -0.3 -0.5 +0.2 -1.0 -0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.7 -0.1 -0.1 -0.0
no phage P2L5 -0.1 -0.4 -0.3 -0.8 +0.0
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 +0.1 -0.0 -1.5 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.4 -0.3 -0.4 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.1 -0.3 -1.0 +0.0
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.1 -0.3 -1.1 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 -0.3 -0.9 +0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.7 -0.0 +0.4 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.4 +0.0 -1.5 +0.0
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.0 +0.3 +0.0 -1.2 +0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.5 -0.2 -0.6 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.1 -0.3 -0.8 +0.4
nophagecontrol No phage control +0.1 -0.2 +0.2 -0.9 +0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.6 -0.4 -0.6 -0.1
phage AgroPhage_E10 +0.2 -0.4 +0.4 -0.7 +0.0
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.5 +0.2 -1.3 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.6 +0.1 -1.2 +0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.1 +0.0 +1.1 -0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.3 +0.1 +0.2 +0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.8 -0.3 +0.3 -0.2
carbon source D-Saccharic potassium salt (C) -0.2 +0.2 +0.2 +0.7 -0.4
no phage P1L4 -0.4 +0.0 -0.3 +1.1 +0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.1 -0.3 +1.3 -0.1
nitrogen source Choline chloride (N) +0.2 +0.4 +0.0 +0.6 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 +0.8 +0.1 +0.3 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.4 +0.2 +0.8 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.2 -0.0 +1.0 +0.4
nitrogen source DL-2-Aminobutyric (N) +0.0 +0.7 -0.3 +3.2 +0.2
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