Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1887 and Atu1888 are separated by 146 nucleotidesAtu1888 and Atu1889 are separated by 13 nucleotidesAtu1889 and Atu1890 are separated by 8 nucleotidesAtu1890 and Atu1891 are separated by 152 nucleotides Atu1887: Atu1887 - succinoglycan biosynthesis protein, at 1,866,486 to 1,867,040 Atu1887 Atu1888: Atu1888 - two component sensor kinase, at 1,867,187 to 1,868,722 Atu1888 Atu1889: Atu1889 - diacylglycerol kinase, at 1,868,736 to 1,869,140 Atu1889 Atu1890: Atu1890 - cobyrinic acid synthase, at 1,869,149 to 1,870,183 Atu1890 Atu1891: Atu1891 - cobalamin biosynthesis protein, at 1,870,336 to 1,871,121 Atu1891
Group Condition Atu1887 Atu1888 Atu1889 Atu1890 Atu1891
carbon source Propan-1-ol (C) +0.2 +0.4 -0.3 N.D. -3.9
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.1 +0.1 N.D. -2.8
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.5 -1.0 N.D. -3.0
stress R2A with Calcium Chloride Dihydrate 87.5 mM +0.0 -0.2 +0.1 N.D. -2.9
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 -2.3 N.D. -0.7
phage AgroPhage_E10 +0.1 +0.3 -0.3 N.D. -2.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.2 -1.0 N.D. -1.8
carbon source Propan-1-ol (C) +0.4 +0.3 +0.1 N.D. -3.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.4 -0.9 N.D. -1.3
stress R2A with Chlorate 400 mM -0.1 +0.5 +0.2 N.D. -2.5
carbon source NAG (C) +0.1 +0.9 -0.1 N.D. -2.7
carbon source NAG (C) +0.1 +0.8 -0.3 N.D. -2.3
carbon source L-Fucose (C) +0.1 +0.6 -0.6 N.D. -1.8
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 -1.7 N.D. -0.5
phage AgroPhage_A07 -0.7 +0.7 +0.2 N.D. -1.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.8 -0.8 N.D. -1.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.1 +0.0 -0.6 N.D. -1.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 +0.4 N.D. -2.1
Atjh10 -0.8 +0.6 +0.3 N.D. -1.3
r2a_control R2A control +0.1 +0.6 +0.1 N.D. -2.0
carbon source D-Saccharic potassium salt (C) +0.2 +1.1 -0.3 N.D. -1.7
stress R2A with Nickel (II) chloride 0.05 mM +0.0 +1.0 +0.3 N.D. -1.7
carbon source D-Galacturonic Acid (C) +0.0 +1.5 +0.2 N.D. -1.6
stress R2A with G418 disolution 0.02 mM -0.1 +1.0 +0.7 N.D. -1.4
carbon source D-Galacturonic Acid (C) +0.0 +1.5 +0.1 N.D. -1.4
stress R2A with Cobalt chloride 0.02 mM +0.5 +1.3 -0.1 N.D. -0.9
stress R2A with Cobalt chloride 0.02 mM +0.0 +1.5 +0.4 N.D. -0.9
stress R2A with Vancomycin 0.009 mM +0.3 -0.0 +3.0 N.D. -0.6
nitrogen source DL-2-Aminobutyric (N) +0.1 -0.1 +2.4 N.D. +0.5
stress R2A with Vancomycin 0.009 mM -0.1 +0.1 +2.4 N.D. +0.7
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