Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1886 and Atu1887 are separated by 19 nucleotidesAtu1887 and Atu1888 are separated by 146 nucleotidesAtu1888 and Atu1889 are separated by 13 nucleotidesAtu1889 and Atu1890 are separated by 8 nucleotides Atu1886: Atu1886 - hypothetical protein, at 1,865,840 to 1,866,466 Atu1886 Atu1887: Atu1887 - succinoglycan biosynthesis protein, at 1,866,486 to 1,867,040 Atu1887 Atu1888: Atu1888 - two component sensor kinase, at 1,867,187 to 1,868,722 Atu1888 Atu1889: Atu1889 - diacylglycerol kinase, at 1,868,736 to 1,869,140 Atu1889 Atu1890: Atu1890 - cobyrinic acid synthase, at 1,869,149 to 1,870,183 Atu1890
Group Condition Atu1886 Atu1887 Atu1888 Atu1889 Atu1890
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.1 -0.4 -1.6 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.1 +0.2 -2.3 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.5 +0.1 -0.9 N.D.
no phage P2L5 -0.2 +0.2 +0.1 -1.4 N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.3 +0.3 -1.7 N.D.
carbon source Sucrose (C) +0.2 +0.3 -0.4 -0.7 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.3 +0.5 -1.0 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.1 +0.5 -1.2 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 -0.2 -1.0 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.4 +0.4 -0.7 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.4 +0.1 -1.1 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.3 +0.2 -1.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -0.5 +0.4 -0.4 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.4 +0.4 -1.1 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.0 +0.8 -0.8 N.D.
phage AgroPhage_A07 +0.0 -0.7 +0.7 +0.2 N.D.
stress R2A with vanadium chloride 0.08 mM +0.2 +0.4 +0.4 -0.7 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +1.1 +0.0 -0.6 N.D.
carbon source D-Saccharic potassium salt (C) +0.1 +0.2 +1.1 -0.3 N.D.
stress R2A with silver chloride 5 mM +0.4 -0.2 +1.0 +0.4 N.D.
r2a_control R2A control +0.2 +0.0 +1.1 +0.3 N.D.
stress R2A with G418 disolution 0.02 mM +0.1 -0.1 +1.0 +0.7 N.D.
carbon source D-Galacturonic Acid (C) -0.0 +0.0 +1.5 +0.2 N.D.
carbon source D-Galacturonic Acid (C) +0.2 +0.0 +1.5 +0.1 N.D.
carbon source D-Saccharic potassium salt (C) +0.4 +0.2 +1.0 +0.3 N.D.
stress R2A with Cobalt chloride 0.02 mM +0.2 +0.5 +1.3 -0.1 N.D.
stress R2A with Cobalt chloride 0.02 mM +0.3 +0.0 +1.5 +0.4 N.D.
stress R2A with Vancomycin 0.009 mM -0.1 -0.1 +0.1 +2.4 N.D.
nitrogen source DL-2-Aminobutyric (N) +0.1 +0.1 -0.1 +2.4 N.D.
stress R2A with Vancomycin 0.009 mM -0.1 +0.3 -0.0 +3.0 N.D.
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