Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1885 and Atu1886 are separated by 70 nucleotidesAtu1886 and Atu1887 are separated by 19 nucleotidesAtu1887 and Atu1888 are separated by 146 nucleotidesAtu1888 and Atu1889 are separated by 13 nucleotides Atu1885: Atu1885 - transcriptional regulator, AsnC family, at 1,865,281 to 1,865,769 Atu1885 Atu1886: Atu1886 - hypothetical protein, at 1,865,840 to 1,866,466 Atu1886 Atu1887: Atu1887 - succinoglycan biosynthesis protein, at 1,866,486 to 1,867,040 Atu1887 Atu1888: Atu1888 - two component sensor kinase, at 1,867,187 to 1,868,722 Atu1888 Atu1889: Atu1889 - diacylglycerol kinase, at 1,868,736 to 1,869,140 Atu1889
Group Condition Atu1885 Atu1886 Atu1887 Atu1888 Atu1889
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.4 +0.2 -0.4 -1.6
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 +0.1 +0.2 -2.3
no phage P2L5 N.D. -0.2 +0.2 +0.1 -1.4
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.0 +0.3 +0.3 -1.7
carbon source Sucrose (C) N.D. +0.2 +0.3 -0.4 -0.7
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.3 +0.3 +0.5 -1.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 +0.1 +0.5 -1.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.4 +0.3 -0.2 -1.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 -0.4 +0.4 -0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.1 +0.4 +0.1 -1.1
Atjh10 N.D. -0.5 -0.8 +0.6 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.2 +0.3 +0.2 -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.4 -0.5 +0.4 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.2 +0.4 +0.4 -1.1
Atjh10 N.D. -0.6 -0.5 +0.4 +0.7
phage AgroPhage_A07 N.D. -0.0 -0.7 +0.7 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 -0.0 +0.8 -0.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 +1.1 +0.0 -0.6
carbon source D-Saccharic potassium salt (C) N.D. +0.1 +0.2 +1.1 -0.3
stress R2A with silver chloride 5 mM N.D. +0.4 -0.2 +1.0 +0.4
stress R2A with G418 disolution 0.02 mM N.D. +0.1 -0.1 +1.0 +0.7
r2a_control R2A control N.D. +0.2 +0.0 +1.1 +0.3
carbon source D-Galacturonic Acid (C) N.D. -0.0 +0.0 +1.5 +0.2
carbon source D-Galacturonic Acid (C) N.D. +0.2 +0.0 +1.5 +0.1
carbon source D-Saccharic potassium salt (C) N.D. +0.4 +0.2 +1.0 +0.3
stress R2A with Cobalt chloride 0.02 mM N.D. +0.2 +0.5 +1.3 -0.1
stress R2A with Cobalt chloride 0.02 mM N.D. +0.3 +0.0 +1.5 +0.4
stress R2A with Vancomycin 0.009 mM N.D. -0.1 -0.1 +0.1 +2.4
nitrogen source DL-2-Aminobutyric (N) N.D. +0.1 +0.1 -0.1 +2.4
stress R2A with Vancomycin 0.009 mM N.D. -0.1 +0.3 -0.0 +3.0
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