Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1865 and Atu1866 are separated by 157 nucleotidesAtu1866 and Atu1867 are separated by 40 nucleotidesAtu1867 and Atu1868 overlap by 17 nucleotidesAtu1868 and Atu1869 are separated by 114 nucleotides Atu1865: Atu1865 - hypothetical protein, at 1,845,156 to 1,845,392 Atu1865 Atu1866: Atu1866 - hypothetical protein, at 1,845,550 to 1,845,744 Atu1866 Atu1867: Atu1867 - glutamate racemase, at 1,845,785 to 1,846,606 Atu1867 Atu1868: Atu1868 - tRNA/rRNA methyltransferase, at 1,846,590 to 1,847,423 Atu1868 Atu1869: Atu1869 - hypothetical protein, at 1,847,538 to 1,848,056 Atu1869
Group Condition Atu1865 Atu1866 Atu1867 Atu1868 Atu1869
stress R2A with Vancomycin 0.009 mM -0.1 N.D. -1.2 -2.1 -0.3
stress R2A with Vancomycin 0.009 mM +0.2 N.D. -1.0 -1.1 -0.6
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. -0.0 -0.5 -0.8
phage AgroPhage_D10 +0.3 N.D. -0.7 -0.6 -0.2
stress R2A with Tetracycline 0.002 mM -0.2 N.D. +0.1 -1.1 +0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 N.D. +0.1 -0.6 -0.6
phage AgroPhage_B07 -0.5 N.D. -0.3 +0.4 -0.3
phage AgroPhage_E10 +0.5 N.D. +0.3 -1.1 -0.4
stress R2A with Tetracycline 0.002 mM -0.1 N.D. +0.2 -1.0 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 N.D. -0.7 -0.4 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 N.D. +0.2 -0.8 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 N.D. -0.4 -0.3 +0.7
stress R2A with m-arsenite 0.8 mM +0.7 N.D. -1.3 +1.1 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 N.D. -0.1 -0.5 -0.2
stress R2A with Ticarcillin 0.01 mM +0.1 N.D. +0.6 -0.6 -0.1
stress R2A with m-arsenite 0.8 mM +0.3 N.D. -1.1 +0.7 +0.1
carbon source D-Mannose (C) +0.4 N.D. +0.0 +0.4 -0.7
phage Phage 100.1 + bacteria +0.4 N.D. -0.3 +0.5 -0.4
carbon source Lactitol (C) +0.7 N.D. -0.2 -0.6 +0.5
carbon source methyl-beta-D-xylopyranoside (C) -0.4 N.D. +0.3 +0.4 +0.3
carbon source L-ascorbate (C) -0.3 N.D. +0.5 +1.0 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 N.D. +0.4 +0.7 -0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. +0.5 +1.0 +0.2
nitrogen source L-Pipecolic Acid (N) -0.1 N.D. +1.3 -0.3 +0.3
stress R2A with Ceftazidime 4 mM +0.3 N.D. +1.0 -0.4 +0.2
carbon source L-ascorbate (C) -0.2 N.D. +0.3 +0.9 +0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 N.D. +0.1 +0.4 +0.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 N.D. -0.1 +0.5 +0.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 N.D. +0.4 +0.6 +0.3
nitrogen source L-Pipecolic Acid (N) +0.0 N.D. +1.4 -0.1 +0.3
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