Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1861 and Atu1862 are separated by 39 nucleotidesAtu1862 and Atu1863 are separated by 95 nucleotidesAtu1863 and Atu1864 are separated by 37 nucleotidesAtu1864 and Atu1865 are separated by 164 nucleotides Atu1861: Atu1861 - transporter, at 1,840,759 to 1,841,742 Atu1861 Atu1862: Atu1862 - hypothetical protein, at 1,841,782 to 1,843,326 Atu1862 Atu1863: Atu1863 - permease, at 1,843,422 to 1,844,315 Atu1863 Atu1864: Atu1864 - putative homoserine/homoserine lactone efflux protein, at 1,844,353 to 1,844,991 Atu1864 Atu1865: Atu1865 - hypothetical protein, at 1,845,156 to 1,845,392 Atu1865
Group Condition Atu1861 Atu1862 Atu1863 Atu1864 Atu1865
phage AgroPhage_F10 -0.6 N.D. -0.7 -0.8 -0.1
phage AgroPhage_C10 -0.5 N.D. -0.1 -0.6 -0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 N.D. -0.1 -1.0 -0.3
phage AgroPhage_F04 -0.6 N.D. +0.1 -0.3 -0.4
phage AgroPhage_D07 -0.6 N.D. +0.1 -0.4 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 N.D. -0.7 +0.1 -0.4
stress R2A with tungstate 375 mM +0.2 N.D. -0.4 +0.2 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 N.D. -0.8 +0.1 -0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 N.D. -0.6 -0.2 +0.4
Atjh14 -0.4 N.D. +0.5 -0.7 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 N.D. +0.9 -0.2 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 N.D. +0.5 +0.6 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 N.D. +0.6 +0.0 +0.3
in planta Bethi_Library_OD0.5_6week -0.4 N.D. +0.3 +0.4 +0.3
no phage P2L5 -0.7 N.D. -0.3 +1.3 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.5 N.D. +0.6 +0.2 +0.6
stress Timentin 6.25 ug/mL +0.3 N.D. +0.3 -0.3 +0.6
carbon source Asolectin from soybean (C) +0.2 N.D. -0.3 +0.7 +0.4
in planta Bethi_Library_OD0.5 -0.1 N.D. +0.4 +0.5 +0.4
phage AgroPhage_E10 +0.2 N.D. +0.7 -0.2 +0.6
stress Nerol 1.25 mM +0.2 N.D. +0.3 +0.4 +0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 N.D. +0.6 +0.5 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 N.D. +0.3 +0.7 +0.5
in planta Bethi_Library_OD1.0 +0.2 N.D. +0.2 +0.7 +0.4
stress R2A with Phenazine methosulfate 0.05 mM +0.3 N.D. +0.4 +0.5 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 N.D. +0.3 +0.1 +0.3
stress R2A with nitrite 9 mM +0.4 N.D. +0.5 +0.3 +0.3
in planta Bethi_Library_OD0.01 +0.1 N.D. +0.8 +0.3 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 N.D. +0.5 +0.9 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 N.D. +0.9 +0.2 +0.8
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