Fitness for 5 genes in Agrobacterium fabrum C58

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1014 experiments or choose conditions or try the comparative fitness browser

500 ntAtu1814 and Atu8022 are separated by 180 nucleotidesAtu8022 and Atu1815 are separated by 237 nucleotidesAtu1815 and Atu1816 are separated by 14 nucleotidesAtu1816 and Atu1817 overlap by 11 nucleotides Atu1814: Atu1814 - epoxide hydrolase, at 1,793,404 to 1,794,459 Atu1814 Atu8022: Atu8022 - hypothetical protein, at 1,794,640 to 1,794,795 Atu8022 Atu1815: Atu1815 - HlyD family secretion protein, at 1,795,033 to 1,796,331 Atu1815 Atu1816: Atu1816 - ABC transporter, nucleotide binding/ATPase protein, at 1,796,346 to 1,797,065 Atu1816 Atu1817: Atu1817 - hypothetical protein, at 1,797,055 to 1,798,263 Atu1817
Group Condition Atu1814 Atu8022 Atu1815 Atu1816 Atu1817
phage AgroPhage_C10 N.D. -1.1 +0.2 -0.7 +0.1
stress Streptomycin 200 ug/mL N.D. +0.0 -0.6 -0.4 -0.5
stress Chloramphenicol 12.5 ug/mL N.D. -1.1 +0.0 -0.3 +0.0
Atjh15 N.D. -0.8 -0.5 -0.2 +0.1
phage AgroPhage_C04 N.D. -0.1 -0.2 -0.2 -0.8
Atjh2 N.D. -0.2 -0.3 -0.5 -0.3
phage phage 100.2 N.D. -0.4 -0.2 -0.3 -0.3
Atjh2 N.D. -0.3 +0.1 -0.4 -0.4
phage AgroPhage_E10 N.D. -0.4 -0.6 +0.2 +0.1
Atjh14 N.D. +0.5 +0.1 -1.0 -0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 +0.7 -0.8 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.9 +0.1 +0.2 +0.1
stress R2A with molybdate 400 mM N.D. -0.5 -0.3 +0.3 +0.1
stress Chloramphenicol 12.5 ug/mL N.D. -0.7 +0.1 +0.6 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.7 -0.0 +0.1 +0.5
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.6 +0.3 +0.3 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. -0.4 +0.3 -0.2 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.7 -0.5 +0.3 -0.1
stress R2A with Vancomycin 0.009 mM N.D. -0.5 +0.4 +0.6 +0.5
stress R2A with Vancomycin 0.009 mM N.D. -0.6 +0.5 +0.6 +0.7
stress R2A with Lithium chloride 900 mM N.D. +0.5 +0.3 +0.1 +0.2
carbon source D-Raffinose (C) N.D. +0.6 +0.1 +0.2 +0.3
nitrogen source DL-2-Aminobutyric (N) N.D. +1.0 -0.2 +0.1 +0.4
stress R2A with nitrite 9 mM N.D. +0.5 +0.3 +0.2 +0.3
carbon source Xylobiose (C) N.D. +0.3 +0.4 +0.3 +0.4
carbon source NAG (C) N.D. +0.3 +0.3 +0.3 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.9 -0.0 +0.3 +0.2
nitrogen source L-Ornithine (N) N.D. +0.3 +0.5 +0.3 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +1.0 +0.2 +0.5 +0.1
nitrogen source L-Ornithine (N) N.D. +0.3 +0.6 +0.5 +0.5
remove
Atu1814
plot		 remove
Atu8022
plot		 remove
Atu1815		 remove
Atu1816
plot		 remove
Atu1817
plot