Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1778 and Atu1779 are separated by 3 nucleotidesAtu1779 and Atu1780 are separated by 187 nucleotidesAtu1780 and Atu1781 are separated by 12 nucleotidesAtu1781 and Atu1782 are separated by 27 nucleotides Atu1778: Atu1778 - transcription-repair coupling factor, at 1,762,494 to 1,765,991 Atu1778 Atu1779: Atu1779 - hypothetical protein, at 1,765,995 to 1,766,306 Atu1779 Atu1780: Atu1780 - ATP-dependent DNA helicase, at 1,766,494 to 1,768,599 Atu1780 Atu1781: Atu1781 - hypothetical protein, at 1,768,612 to 1,768,884 Atu1781 Atu1782: Atu1782 - hypothetical protein, at 1,768,912 to 1,769,202 Atu1782
Group Condition Atu1778 Atu1779 Atu1780 Atu1781 Atu1782
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.7 -0.5 -0.6 -1.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.6 -0.6 -0.2 -1.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 -0.6 -1.2 -1.1 -0.0 -0.2
stress R2A with Cisplatin 0.0016 mM -0.7 -0.4 -1.6 -0.0 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.5 -0.6 -1.1 -0.3 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -0.9 -0.9 -0.9 -0.2 +0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -1.0 -0.2 -0.5 -0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 -0.5 -1.4 -0.1 -0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.9 -0.8 +0.0 -0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.8 -1.1 -0.8 -0.3 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.7 -0.6 -1.0 -0.3 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -1.8 -0.2 -0.6 +0.4
stress R2A with Cisplatin 0.0016 mM -0.7 -0.3 -1.7 +0.2 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 -0.6 -0.9 -0.9 +0.3 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -0.8 -0.8 -1.1 +0.3 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.8 -1.2 -0.7 +1.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 -0.9 -0.4 -1.2 +0.1 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -1.0 +0.5 -0.5 -0.6 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.5 -0.6 -1.0 -0.2 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.9 -0.7 +0.3 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.3 -0.8 -0.3 +0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.7 -0.6 +0.7 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.6 +0.5 -1.3 +0.1 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 +1.7 -1.1 -0.4 -0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +1.1 -0.8 +0.2 -0.4
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 -1.1 -0.3 +0.5 +1.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +1.9 -1.2 +0.1 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 +2.3 +0.1 -0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 +2.4 -0.4 -0.0 +0.2
nitrogen source DL-2-Aminobutyric (N) -0.1 +1.7 -0.2 +0.8 +0.6
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