Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1699 and Atu1700 are separated by 96 nucleotidesAtu1700 and Atu1701 are separated by 300 nucleotidesAtu1701 and Atu1702 are separated by 8 nucleotidesAtu1702 and Atu1703 are separated by 212 nucleotides Atu1699: Atu1699 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 1,684,196 to 1,684,711 Atu1699 Atu1700: Atu1700 - lipoprotein, at 1,684,808 to 1,686,421 Atu1700 Atu1701: Atu1701 - protein-L-isoaspartate O-methyltransferase, at 1,686,722 to 1,687,363 Atu1701 Atu1702: Atu1702 - stationary-phase survival protein, at 1,687,372 to 1,688,142 Atu1702 Atu1703: Atu1703 - seryl-tRNA synthetase, at 1,688,355 to 1,689,638 Atu1703
Group Condition Atu1699 Atu1700 Atu1701 Atu1702 Atu1703
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 N.D. -5.9 +0.8 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.4 N.D. -3.0 +0.3 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.1 N.D. -2.6 -0.2 N.D.
phage AgroPhage_D04 -0.3 N.D. -3.6 +0.1 N.D.
stress Timentin 6.25 ug/mL -0.1 N.D. -2.1 -0.4 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 N.D. -2.1 -0.6 N.D.
Atjh14 +0.7 N.D. -2.4 -0.5 N.D.
stress Chloramphenicol 12.5 ug/mL -0.5 N.D. -1.9 +0.5 N.D.
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.7 N.D. -1.2 -0.0 N.D.
stress R2A with cyanide 2.5 mM -0.2 N.D. -1.4 -0.2 N.D.
stress R2A with m-arsenite 0.8 mM -0.0 N.D. -1.8 +0.0 N.D.
carbon source methyl-beta-D-xylopyranoside (C) -0.4 N.D. -1.4 +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. -1.3 -0.5 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 N.D. -1.5 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 N.D. -1.2 -0.5 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 N.D. +0.5 -1.2 N.D.
phage phage 100.2 +0.5 N.D. -1.5 +0.3 N.D.
Atjh15 +0.8 N.D. -1.1 -0.1 N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 N.D. +0.4 +0.6 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 N.D. +0.9 +0.2 N.D.
phage AgroPhage_D10 -0.0 N.D. +1.5 -0.6 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 N.D. +1.5 -0.4 N.D.
phage AgroPhage_A07 -0.3 N.D. +1.4 +0.3 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.9 N.D. +0.8 +0.2 N.D.
no phage P4L5 +0.4 N.D. +1.2 +0.2 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 N.D. +0.2 +1.2 N.D.
stress R2A with Vancomycin 0.009 mM -0.4 N.D. +1.8 +0.9 N.D.
phage AgroPhage_C10 +0.3 N.D. +2.0 +0.1 N.D.
stress R2A with Vancomycin 0.009 mM +0.1 N.D. +2.1 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 N.D. +1.9 +0.3 N.D.
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