Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1673 and Atu1674 are separated by 171 nucleotidesAtu1674 and Atu1675 are separated by 207 nucleotidesAtu1675 and Atu1676 are separated by 4 nucleotidesAtu1676 and Atu1677 are separated by 160 nucleotides Atu1673: Atu1673 - diaminopimelate decarboxylase, at 1,660,004 to 1,661,185 Atu1673 Atu1674: Atu1674 - hypothetical protein, at 1,661,357 to 1,662,040 Atu1674 Atu1675: Atu1675 - transcriptional regulator, at 1,662,248 to 1,663,345 Atu1675 Atu1676: Atu1676 - para-aminobenzoate synthase component I, at 1,663,350 to 1,664,384 Atu1676 Atu1677: Atu1677 - queuine tRNA-ribosyltransferase, at 1,664,545 to 1,665,675 Atu1677
Group Condition Atu1673 Atu1674 Atu1675 Atu1676 Atu1677
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 -0.5 -0.2 -2.9
stress Streptomycin 200 ug/mL +0.1 -0.0 +0.3 -0.3 -3.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.1 +0.1 -0.2 -2.7
stress R2A with Vancomycin 0.009 mM +0.1 +0.1 +0.2 +0.1 -3.3
stress Streptomycin 200 ug/mL -0.1 +0.3 +0.1 +0.1 -2.9
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.1 +0.3 +0.0 -2.4
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.3 +0.1 +0.1 -2.6
stress R2A with Vancomycin 0.009 mM +0.3 +0.5 +0.1 -0.3 -2.8
stress Chloramphenicol 12.5 ug/mL +0.0 +0.1 -0.0 -0.7 -1.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 -0.2 -0.0 -2.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 +0.1 +0.1 -1.8
phage AgroPhage_C04 -0.1 +0.2 +0.1 -1.3 -1.0
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 -0.2 +0.1 -1.9
stress Chloramphenicol 12.5 ug/mL +0.3 +0.4 +0.1 -0.4 -2.2
stress R2A with Tetracycline 0.002 mM -0.0 +0.1 -0.2 +0.2 -1.8
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.2 -0.4 +0.1 -1.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.1 +0.1 -0.4 -1.9
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 +0.6 -0.5 -1.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.6 -0.2 -0.0 -2.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 -0.1 +0.8 -2.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.8 +0.4 -0.4 -2.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.2 -0.0 -0.4 -1.3
stress R2A with Gentamicin 0.00125 mM +0.3 +0.2 +0.0 +0.1 -1.7
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.5 +0.2 +0.2 -1.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.6 +0.1 -0.3 -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +0.3 +0.1 -0.6 -0.9
Atjh14 -0.7 -0.4 +0.5 +0.7 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.3 +0.5 +0.6 -1.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 -1.0 +0.7 +0.0 -0.4
no phage P2L5 -0.1 +0.5 +0.1 +0.8 -1.1
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