Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1665 and Atu1666 are separated by 276 nucleotidesAtu1666 and Atu1667 overlap by 64 nucleotidesAtu1667 and Atu8161 are separated by 451 nucleotidesAtu8161 and Atu1669 are separated by 377 nucleotides Atu1665: Atu1665 - tRNA-Leu, at 1,652,421 to 1,652,503 Atu1665 Atu1666: Atu1666 - hypothetical protein, at 1,652,780 to 1,653,136 Atu1666 Atu1667: Atu1667 - hypothetical protein, at 1,653,073 to 1,653,306 Atu1667 Atu8161: Atu8161 - hypothetical protein, at 1,653,758 to 1,653,901 Atu8161 Atu1669: Atu1669 - glucose inhibited division protein, at 1,654,279 to 1,655,724 Atu1669
Group Condition Atu1665 Atu1666 Atu1667 Atu8161 Atu1669
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 -1.8 -1.0 -0.3
phage AgroPhage_E04 N.D. +0.2 +0.1 -3.3 +0.3
phage AgroPhage_F04 N.D. -0.0 -1.3 -1.1 +0.0
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. +0.1 -1.5 -0.9 -0.1
stress R2A with Kanamycin sulfate 0.02 mM N.D. +0.0 -2.3 +0.2 +0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.3 -0.4 -1.5 -0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 -1.7 -0.2 -0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.4 -2.7 +0.8 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.5 -1.4 -0.1 -0.2
stress R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM N.D. -0.1 +0.5 -1.7 +0.0
pH R2A pH 5.5 N.D. +0.1 -2.0 +0.6 +0.1
stress R2A with Kanamycin sulfate 0.02 mM N.D. -0.2 -1.6 +0.7 -0.0
carbon source L-ascorbate (C) N.D. +0.2 +0.2 -1.8 +0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.5 -2.1 +0.6 +0.3
stress R2A with G418 disolution 0.02 mM N.D. +0.3 -1.7 +0.7 -0.0
nitrogen source DL-2-Aminobutyric (N) N.D. +0.9 -0.9 -0.4 -0.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. +0.7 -0.3 -1.1 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.6 -1.3 +0.0 +0.4
pH R2A pH 5.5 N.D. +0.0 -1.6 +1.5 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 -0.5 +1.4 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.8 -0.2 +1.4 +0.1
lb_arabidopsis_leaf LB_arabidopsis_leaf N.D. +0.1 -1.0 +1.4 +0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +1.5 -0.8 -0.2 +0.1
phage AgroPhage_F10 N.D. -0.2 +1.1 +0.8 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.4 +0.7 +1.3 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.3 +1.0 +1.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.3 +0.5 +1.6 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.5 +1.2 +0.8 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.5 +2.9 -0.7 +0.2
stress R2A with Vancomycin 0.009 mM N.D. +0.0 +2.9 +1.2 +0.5
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