Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1627 and Atu1628 are separated by 43 nucleotidesAtu1628 and Atu1629 overlap by 4 nucleotidesAtu1629 and Atu1630 are separated by 155 nucleotidesAtu1630 and Atu1631 are separated by 14 nucleotides Atu1627: Atu1627 - ATP-dependent Clp protease, proteolytic subunit, at 1,613,696 to 1,614,304 Atu1627 Atu1628: Atu1628 - hypothetical protein, at 1,614,348 to 1,614,704 Atu1628 Atu1629: Atu1629 - transcriptional regulator, ArsR family, at 1,614,701 to 1,615,015 Atu1629 Atu1630: Atu1630 - phospholipase D family protein, at 1,615,171 to 1,616,727 Atu1630 Atu1631: Atu1631 - two component response regulator, at 1,616,742 to 1,617,491 Atu1631
Group Condition Atu1627 Atu1628 Atu1629 Atu1630 Atu1631
Atjh14 +0.5 -0.2 -3.3 -0.2 +0.2
Atjh2 +0.5 -0.2 -3.0 -0.1 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.9 -2.4 +0.5 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.7 -1.0 +0.0 -0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.1 -2.6 -0.0 +0.8
phage AgroPhage_E10 -0.3 -0.9 -0.8 -0.5 +0.6
stress Chloramphenicol 12.5 ug/mL -0.5 +0.6 -1.4 +0.1 -0.4
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.1 -1.8 +0.3 +0.2
nophagecontrol No phage control +0.4 -0.3 -1.9 -0.1 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 +0.5 -1.5 -0.1 -0.1
nophagecontrol No phage control -0.5 -1.3 +0.8 +0.1 -0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 -1.0 +0.3 -0.7
phage AgroPhage_D10 -0.3 -1.4 +0.5 -0.1 +0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.8 -1.3 -0.1 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 +1.0 -0.6 +0.1 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.6 -1.5 -0.0 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.4 -0.9 +1.0 -0.0 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.7 -1.1 +0.1 +0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.5 -0.8 +1.1 +0.0 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.2 -1.3 +0.3 +0.8
phage AgroPhage_B07 -0.1 -0.9 +1.0 -0.2 +0.5
lb LB -0.2 -0.6 +1.4 -0.2 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.9 +0.9 +0.2 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.0 +1.6 +0.3 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.3 +2.0 -0.1 +0.6
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +1.1 +1.0 -0.1 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 +2.0 -0.0 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.4 +0.2 +0.2 +1.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.1 +2.3 +0.2 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +2.1 -0.3 +0.2 +1.0
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