Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1599 and Atu1600 are separated by 89 nucleotidesAtu1600 and Atu1601 are separated by 114 nucleotidesAtu1601 and Atu1602 are separated by 213 nucleotidesAtu1602 and Atu8159 are separated by 464 nucleotides Atu1599: Atu1599 - (3R)-Hydroxymyristoyl-(acyl carrier protein)- Dehydratase, at 1,581,007 to 1,581,486 Atu1599 Atu1600: Atu1600 - acyl carrier protein, at 1,581,576 to 1,581,860 Atu1600 Atu1601: Atu1601 - oxygen-independent coproporphyrinogen III oxidase, at 1,581,975 to 1,583,324 Atu1601 Atu1602: Atu1602 - transcriptional activator, Crp family, at 1,583,538 to 1,584,263 Atu1602 Atu8159: Atu8159 - hypothetical protein, at 1,584,728 to 1,585,255 Atu8159
Group Condition Atu1599 Atu1600 Atu1601 Atu1602 Atu8159
no phage P4L4 N.D. N.D. -0.6 -1.3 -1.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.7 -1.3 -0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. -0.6 -2.0 +0.0
stress R2A with Vancomycin 0.009 mM N.D. N.D. -0.1 -0.9 -1.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -0.4 -1.1 -0.9
phage Phage 100.2 + bactiera N.D. N.D. -0.5 -1.4 -0.5
phage Phage 100.2 + bactiera N.D. N.D. -0.6 -1.2 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 N.D. N.D. -0.5 -1.1 -0.7
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) N.D. N.D. -0.8 -0.9 -0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. -0.6 -1.4 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. N.D. -1.0 -1.5 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. -0.4 -1.8 +0.0
stress Erythromycin 12.5 ug/mL N.D. N.D. -1.2 +0.4 -1.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. -0.5 -1.6 +0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. N.D. -0.6 -1.2 +0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. N.D. -0.5 -1.1 +1.0
nophagecontrol No phage control N.D. N.D. +0.9 +0.6 -1.4
nophagecontrol No phage control N.D. N.D. +1.3 +0.3 -1.3
phage AgroPhage_F04 N.D. N.D. +1.3 +0.7 -0.6
phage AgroPhage_E10 N.D. N.D. +1.4 +1.1 -0.7
phage AgroPhage_D07 N.D. N.D. +0.9 +1.1 -0.2
stress R2A with m-arsenite 0.8 mM N.D. N.D. +1.3 +1.7 -1.0
stress Chloramphenicol 12.5 ug/mL N.D. N.D. +1.9 +1.1 -0.8
phage AgroPhage_B01 N.D. N.D. +0.8 +0.4 +1.0
stress R2A with m-arsenite 0.8 mM N.D. N.D. +1.2 +1.7 -0.7
phage AgroPhage_D04 N.D. N.D. +0.7 +0.5 +1.1
stress Chloramphenicol 12.5 ug/mL N.D. N.D. +1.7 +1.2 -0.1
phage AgroPhage_H10 N.D. N.D. +1.3 +0.5 +1.2
phage AgroPhage_C10 N.D. N.D. +2.1 +3.0 -0.1
phage AgroPhage_C04 N.D. N.D. +2.1 +3.2 -0.1
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