Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1573 and Atu1574 are separated by 29 nucleotidesAtu1574 and Atu1575 are separated by 9 nucleotidesAtu1575 and Atu1577 are separated by 461 nucleotidesAtu1577 and Atu1578 are separated by 109 nucleotides Atu1573: Atu1573 - hypothetical protein, at 1,559,353 to 1,559,598 Atu1573 Atu1574: Atu1574 - salicylate hydroxylase, at 1,559,628 to 1,560,809 Atu1574 Atu1575: Atu1575 - cystathionine beta lyase, at 1,560,819 to 1,562,006 Atu1575 Atu1577: Atu1577 - ABC transporter, substrate binding protein (amino acid), at 1,562,468 to 1,563,406 Atu1577 Atu1578: Atu1578 - ABC transporter, membrane spanning protein (amino acid), at 1,563,516 to 1,564,712 Atu1578
Group Condition Atu1573 Atu1574 Atu1575 Atu1577 Atu1578
nitrogen source L-Glutamic (N) -0.4 N.D. -0.3 -3.0 -2.8
nitrogen source L-Proline (N) +0.0 N.D. -0.1 -3.5 -2.9
nitrogen source L-Glutamic (N) -1.1 N.D. +0.2 -2.3 -3.1
carbon source D-Saccharic potassium salt (C) -0.1 N.D. -0.4 -2.0 -3.6
nitrogen source L-Aspartic Acid (N) -0.6 N.D. -0.4 -2.5 -2.4
carbon source D-Saccharic potassium salt (C) -0.6 N.D. -0.1 -2.4 -2.6
nitrogen source 2,6-diaminopimelic (N) -0.4 N.D. -0.0 -3.3 -1.9
nitrogen source L-Proline (N) -0.3 N.D. -0.3 -2.4 -2.4
nitrogen source L-Aspartic Acid (N) -0.3 N.D. -0.2 -2.2 -2.7
nitrogen source Beta-alanine (N) -1.1 N.D. -0.3 -2.5 -1.5
nitrogen source D-Alanine (N) -0.6 N.D. -0.0 -2.3 -1.8
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.9 N.D. -0.1 -1.3 -0.5
nitrogen source 3-aminobutyric (N) -0.1 N.D. -0.1 -2.3 -2.1
nitrogen source 2,6-diaminopimelic (N) +0.3 N.D. -0.1 -2.6 -2.0
carbon source L-Alanine (C) +0.2 N.D. -0.1 -2.2 -2.3
nitrogen source D-Alanine (N) -0.1 N.D. +0.1 -2.2 -2.1
nitrogen source L-Lysine (N) -0.9 N.D. -0.2 -1.7 -1.5
nitrogen source L-Lysine (N) -0.5 N.D. -0.3 -1.9 -1.6
nitrogen source L-Arginine (N) -1.5 N.D. -0.3 -1.2 -0.9
nitrogen source Beta-alanine (N) -0.5 N.D. -0.0 -1.7 -1.3
carbon source L-Alanine (C) +0.7 N.D. -0.2 -2.1 -2.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 N.D. +0.2 -1.9 -0.9
carbon source Beta-alanine (C) +0.7 N.D. -0.0 -1.4 -1.2
carbon source L-ascorbate (C) +1.7 N.D. -0.3 -1.6 -1.5
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.1 N.D. +0.5 +0.4 -0.6
carbon source L-ascorbate (C) +1.5 N.D. -0.3 -1.1 -0.8
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +2.7 N.D. -0.4 +0.3 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +3.7 N.D. -0.0 +0.4 -0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +4.8 N.D. +0.1 +0.0 -0.1
nitrogen source DL-2-Aminobutyric (N) +1.3 N.D. -0.3 +10.3 +10.5
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