Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1562 and Atu1563 are separated by 82 nucleotidesAtu1563 and Atu1564 are separated by 207 nucleotidesAtu1564 and Atu1565 are separated by 5 nucleotidesAtu1565 and Atu1566 are separated by 49 nucleotides Atu1562: Atu1562 - protein-export membrane protein SECD, at 1,548,369 to 1,550,942 Atu1562 Atu1563: Atu1563 - preprotein tranlocase protein, at 1,551,025 to 1,551,372 Atu1563 Atu1564: Atu1564 - hypothetical protein, at 1,551,580 to 1,552,452 Atu1564 Atu1565: Atu1565 - serine acetyltransferase, at 1,552,458 to 1,553,060 Atu1565 Atu1566: Atu1566 - hypothetical protein, at 1,553,110 to 1,553,352 Atu1566
Group Condition Atu1562 Atu1563 Atu1564 Atu1565 Atu1566
nophagecontrol No phage control N.D. N.D. +0.1 -0.1 -3.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.0 -0.7 -2.6
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.3 -0.3 -2.6
phage AgroPhage_C04 N.D. N.D. -0.3 -0.1 -2.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.1 -0.2 -2.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -0.1 -0.1 -2.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -0.2 -0.1 -2.2
stress R2A with nitrate 375 mM N.D. N.D. +0.1 +0.2 -2.6
phage AgroPhage_D07 N.D. N.D. -0.0 -1.1 -1.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days N.D. N.D. -0.3 -0.1 -1.9
phage AgroPhage_H03 N.D. N.D. +0.0 +0.4 -2.5
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -0.1 +0.2 -2.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.1 +0.2 -2.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -0.2 +0.5 -2.2
no phage P4L4 N.D. N.D. -0.1 +0.3 -2.0
carbon source L-(+)-Erythrulose (C) N.D. N.D. -0.0 +0.3 -1.9
lb_sorghum_leaf LB_sorghum_leaf N.D. N.D. -0.2 +0.3 -1.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.1 +0.7 -1.7
carbon source L-Xylose (C) N.D. N.D. -1.4 +0.3 +0.6
carbon source L-Fucose (C) N.D. N.D. -1.3 +0.5 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. +0.1 +1.2 -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.3 -0.6 +1.5
phage AgroPhage_E04 N.D. N.D. +0.1 -1.3 +1.8
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.4 -1.1 +2.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.2 +0.1 +1.9
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.2 +0.2 +1.7
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.2 -0.4 +2.9
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.2 +0.9 +1.6
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.1 -0.6 +4.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.3 +0.4 +3.8
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