Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1555 and Atu1556 are separated by 219 nucleotidesAtu1556 and Atu1557 are separated by 66 nucleotidesAtu1557 and Atu1558 are separated by 110 nucleotidesAtu1558 and Atu1559 are separated by 11 nucleotides Atu1555: Atu1555 - tRNA-Leu, at 1,543,368 to 1,543,452 Atu1555 Atu1556: Atu1556 - lipoate biosynthesis protein B, at 1,543,672 to 1,544,373 Atu1556 Atu1557: Atu1557 - alcohol dehydrogenase, at 1,544,440 to 1,545,507 Atu1557 Atu1558: Atu1558 - permease, at 1,545,618 to 1,546,514 Atu1558 Atu1559: Atu1559 - hypothetical protein, at 1,546,526 to 1,546,984 Atu1559
Group Condition Atu1555 Atu1556 Atu1557 Atu1558 Atu1559
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.2 -1.1 -0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -0.1 +0.3 -1.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.1 -0.7 -0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.6 -0.5 +0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.1 +0.5 -1.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.2 +0.5 -0.9
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.5 -0.2 -0.9
nophagecontrol No phage control N.D. N.D. -0.0 -0.8 +0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. +0.1 -1.2 +0.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.1 -0.8 +0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.7 -1.3 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. N.D. +0.5 -0.9 +0.4
phage AgroPhage_H10 N.D. N.D. +0.3 -0.7 +0.4
phage AgroPhage_F04 N.D. N.D. +0.2 -0.7 +0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. N.D. +0.5 -0.8 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +0.2 -0.9 +0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. N.D. +0.4 -0.6 +0.4
phage AgroPhage_E10 N.D. N.D. +0.4 -0.7 +0.4
phage AgroPhage_H04 N.D. N.D. +0.3 -0.6 +0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. +0.4 -0.8 +0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. N.D. +0.4 -0.7 +0.5
lb_tobacco_leaf LB_Tobacco_Leaf N.D. N.D. +0.4 -0.5 +0.7
phage AgroPhage_D04 N.D. N.D. -0.0 -0.4 +1.0
nitrogen source DL-2-Aminobutyric (N) N.D. N.D. -0.6 +0.1 +1.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.5 -0.4 +0.8
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.2 +0.5 +0.7
phage AgroPhage_F10 N.D. N.D. +0.4 -0.0 +0.9
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.4 +0.5 +0.7
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.3 +0.6 +0.9
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.7 +1.3 +0.1
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