Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1545 and Atu1546 are separated by 184 nucleotidesAtu1546 and Atu1547 are separated by 71 nucleotidesAtu1547 and Atu1548 are separated by 326 nucleotidesAtu1548 and Atu1549 overlap by 11 nucleotides Atu1545: Atu1545 - hypothetical protein, at 1,535,030 to 1,535,995 Atu1545 Atu1546: Atu1546 - transcriptional regulator, MerR family, at 1,536,180 to 1,536,566 Atu1546 Atu1547: Atu1547 - magnesium transport protein, at 1,536,638 to 1,538,065 Atu1547 Atu1548: Atu1548 - formate dehydrogenase H alpha subunit, at 1,538,392 to 1,540,758 Atu1548 Atu1549: Atu1549 - hypothetical protein, at 1,540,748 to 1,541,074 Atu1549
Group Condition Atu1545 Atu1546 Atu1547 Atu1548 Atu1549
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -1.4 +0.1 +0.3 -0.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -1.7 +0.1 -0.1 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 -2.2 -0.2 +0.2 +0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -1.4 +0.0 +0.2 -0.3
carbon source L-Sorbose (C) -0.2 -1.7 -0.1 +0.1 +0.0
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -1.2 +0.2 -0.0 -0.4
carbon source methyl-beta-D-xylopyranoside (C) -0.0 -1.4 +0.1 -0.0 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -1.9 +0.3 +0.3 -0.2
carbon source Ethyl benzoate (C) -0.1 -1.6 +0.2 -0.0 +0.1
carbon source NAG (C) +0.0 -1.9 +0.1 +0.1 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.9 -0.1 +0.3 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.9 +0.3 +0.1 -0.4
carbon source p-Coumaric (C) -0.2 -1.6 +0.2 -0.0 +0.3
stress D(+)-Carvone 5 mM -1.4 +0.3 +0.0 +0.1 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -1.5 -0.0 +0.4 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.7 -0.1 +0.2 -0.7
stress D(+)-Carvone 5 mM -1.5 +0.5 +0.1 +0.1 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -1.2 +0.2 +0.2 +0.5
carbon source D-Sorbitol (C) +0.3 -1.4 +0.2 +0.0 +0.3
nitrogen source DL-2-Aminobutyric (N) -0.4 -1.0 +0.0 +0.3 +0.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -1.2 +0.7 +0.2 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.9 +0.2 +0.1 +0.8
stress R2A with Vancomycin 0.009 mM +1.5 -0.3 -0.6 -0.1 -0.1
stress R2A with Vancomycin 0.009 mM +2.0 -0.6 -0.9 -0.2 +0.8
carbon source L-ascorbate (C) -0.3 +1.2 +0.3 +0.2 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 +0.4 +0.5 +0.6
carbon source Phloretic Acid (C) -0.1 +1.8 +0.1 -0.1 -0.1
carbon source Phloretic Acid (C) +0.0 +1.8 +0.1 -0.1 -0.0
carbon source Myristic (C) +0.1 +5.7 +0.4 +0.0 +0.1
carbon source Myristic (C) +0.2 +5.8 +0.4 -0.2 +0.2
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