Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1521 and Atu1522 are separated by 21 nucleotidesAtu1522 and Atu1523 are separated by 536 nucleotidesAtu1523 and Atu1524 are separated by 103 nucleotidesAtu1524 and Atu1525 are separated by 191 nucleotides Atu1521: Atu1521 - ABC transporter, substrate binding protein (zinc), at 1,510,841 to 1,511,830 Atu1521 Atu1522: Atu1522 - transcriptional regulator, LacI family, at 1,511,852 to 1,512,871 Atu1522 Atu1523: Atu1523 - beta-mannosidase precursor, at 1,513,408 to 1,515,891 Atu1523 Atu1524: Atu1524 - hypothetical protein, at 1,515,995 to 1,517,026 Atu1524 Atu1525: Atu1525 - hypothetical protein, at 1,517,218 to 1,517,544 Atu1525
Group Condition Atu1521 Atu1522 Atu1523 Atu1524 Atu1525
carbon source D-Saccharic potassium salt (C) -0.1 -1.5 -0.2 -0.1 +0.1
carbon source D-Saccharic potassium salt (C) -0.2 -1.7 -0.1 +0.2 +0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.7 +0.2 +0.2 -0.0
carbon source L-ascorbate (C) -0.2 -1.2 +0.1 +0.2 +0.2
carbon source L-ascorbate (C) -0.2 -1.3 +0.2 +0.3 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.8 +0.4 -0.3 -1.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.6 +0.1 -0.1 -1.0
carbon source Mannobiose (C) -0.1 +2.2 -2.1 +0.1 +0.1
carbon source Methyl beta-D-glucopyranoside (C) -0.4 +1.0 +0.0 +0.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 -0.8 +0.2 -0.1 +0.7
phage AgroPhage_C04 +1.0 -0.1 -0.5 -0.2 +0.2
carbon source Xylobiose (C) -0.1 +1.1 +0.2 +0.0 -0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.1 -0.1 +0.2 +1.0
carbon source Mannobiose (C) +0.3 +2.2 -1.9 -0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 -0.7 +0.0 +0.3 +0.8
phage AgroPhage_C10 +1.7 +0.0 -0.5 -0.2 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.4 +0.5 +0.1 +0.5
carbon source Methyl-B-D-galactopyranoside (C) -0.1 +1.4 -0.0 +0.0 -0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.3 +0.2 +0.2 +0.7
phage phage 95.1 +1.3 +0.4 +0.1 -0.3 -0.3
carbon source gluconate (C) -0.2 +1.4 -0.0 +0.2 -0.0
phage Phage 95.3 + bacteria +1.1 +0.2 +0.2 +0.2 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.3 +0.1 -0.2 +1.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.6 +0.3 -0.1 +0.4
carbon source Methyl-B-D-galactopyranoside (C) -0.1 +1.6 -0.0 +0.1 +0.1
carbon source gluconate (C) -0.0 +1.5 -0.1 +0.1 +0.2
carbon source D-Leucrose (C) -0.0 +3.9 -0.1 +0.0 +0.1
carbon source D-Leucrose (C) -0.1 +4.2 -0.1 +0.1 +0.1
carbon source D-Leucrose (C) +0.1 +4.1 -0.0 +0.1 +0.0
carbon source D-Leucrose (C) +0.1 +3.9 +0.1 +0.1 +0.1
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