Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1516 and Atu1517 are separated by 31 nucleotidesAtu1517 and Atu1518 are separated by 42 nucleotidesAtu1518 and Atu1519 overlap by 4 nucleotidesAtu1519 and Atu1520 overlap by 8 nucleotides Atu1516: Atu1516 - hypothetical protein, at 1,507,322 to 1,508,011 Atu1516 Atu1517: Atu1517 - hypothetical protein, at 1,508,043 to 1,508,573 Atu1517 Atu1518: Atu1518 - transcriptional regulator, Fur family, at 1,508,616 to 1,509,029 Atu1518 Atu1519: Atu1519 - ABC transporter, membrane spanning protein (zinc), at 1,509,026 to 1,509,844 Atu1519 Atu1520: Atu1520 - ABC transporter, nucleotide binding/ATPase protein (zinc), at 1,509,837 to 1,510,736 Atu1520
Group Condition Atu1516 Atu1517 Atu1518 Atu1519 Atu1520
carbon source L-Xylose (C) -1.6 -2.1 +0.1 +0.0 -0.2
stress R2A with m-arsenite 0.8 mM -0.1 -0.4 -2.8 -0.1 -0.1
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.7 -1.6 +0.0 -0.5
carbon source L-Sorbose (C) -0.2 +0.0 -2.2 +0.1 -0.5
carbon source L-Xylose (C) -1.2 -1.9 +0.1 -0.0 +0.3
phage AgroPhage_E04 +0.0 +0.0 -2.0 -0.2 -0.5
stress R2A with m-arsenite 0.8 mM -0.0 -0.4 -2.0 +0.3 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -1.0 -0.8 -0.3 -0.3
carbon source L-Sorbose (C) -0.1 -0.0 -1.7 -0.3 -0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.8 -0.7 -0.3 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.2 -1.6 +0.0 -0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 +0.1 -0.5 -0.0 -0.5
phage AgroPhage_A07 -0.3 +0.2 -1.4 -0.3 -0.0
phage AgroPhage_F10 +0.4 -0.6 -0.1 -0.3 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.4 -1.5 -0.0 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.7 -0.8 -0.0 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 +0.2 -0.7 -0.4 +0.3
nophagecontrol No phage control -0.1 +0.5 -1.6 +0.0 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -1.4 +0.8 +0.1 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.3 -0.9 -0.5 +0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.5 +0.3 -1.3 +0.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 -0.9 -0.4 +0.3 +0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.7 +0.6 -0.0 +0.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.5 +0.2 -0.8 -0.0
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.7 -0.6 +0.2 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.3 +0.5 +0.5 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.5 +0.8 +0.3 +0.8
nitrogen source DL-2-Aminobutyric (N) +0.6 -0.5 +0.7 +0.3 +0.6
stress R2A with Vancomycin 0.009 mM -0.2 +0.0 +1.5 +0.5 +0.4
stress R2A with Vancomycin 0.009 mM +0.0 -0.1 +1.8 +0.3 +0.5
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